Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFP01375 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFP01375 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFP01375 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFP01375 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.24■□□□□ 0.99
TNFP01375 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.24■□□□□ 0.99
TNFP01375 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFP01375 KRT19P1-201ENST00000405746 1186 ntBASIC21.24■□□□□ 0.99
TNFP01375 AC137761.2-201ENST00000561729 223 ntBASIC21.24■□□□□ 0.99
TNFP01375 AC145350.3-201ENST00000569033 163 ntBASIC21.24■□□□□ 0.99
TNFP01375 KRT18P61-201ENST00000585825 1298 ntBASIC21.24■□□□□ 0.99
TNFP01375 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TNFP01375 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.24■□□□□ 0.99
TNFP01375 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.24■□□□□ 0.99
TNFP01375 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFP01375 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.24■□□□□ 0.99
TNFP01375 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.23■□□□□ 0.99
TNFP01375 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.23■□□□□ 0.99
TNFP01375 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFP01375 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.23■□□□□ 0.99
TNFP01375 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
TNFP01375 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TNFP01375 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.22■□□□□ 0.99
TNFP01375 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TNFP01375 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.21■□□□□ 0.99
TNFP01375 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.21■□□□□ 0.99
TNFP01375 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.21■□□□□ 0.99
TNFP01375 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TNFP01375 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
TNFP01375 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TNFP01375 OR7E47P-201ENST00000546390 1422 ntBASIC21.21■□□□□ 0.99
TNFP01375 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TNFP01375 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
TNFP01375 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFP01375 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFP01375 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFP01375 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
TNFP01375 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFP01375 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.2■□□□□ 0.98
TNFP01375 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.2■□□□□ 0.98
TNFP01375 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFP01375 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFP01375 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.2■□□□□ 0.98
TNFP01375 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFP01375 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFP01375 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.19■□□□□ 0.98
TNFP01375 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.19■□□□□ 0.98
TNFP01375 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.19■□□□□ 0.98
TNFP01375 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.19■□□□□ 0.98
TNFP01375 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.19■□□□□ 0.98
TNFP01375 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TNFP01375 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFP01375 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TNFP01375 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.18■□□□□ 0.98
TNFP01375 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TNFP01375 AC006015.1-201ENST00000429970 570 ntBASIC21.18■□□□□ 0.98
TNFP01375 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.18■□□□□ 0.98
TNFP01375 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFP01375 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.18■□□□□ 0.98
TNFP01375 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.18■□□□□ 0.98
TNFP01375 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.18■□□□□ 0.98
TNFP01375 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFP01375 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.18■□□□□ 0.98
TNFP01375 AP004607.7-201ENST00000527152 1677 ntBASIC21.18■□□□□ 0.98
TNFP01375 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFP01375 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.17■□□□□ 0.98
TNFP01375 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TNFP01375 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.17■□□□□ 0.98
TNFP01375 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.17■□□□□ 0.98
TNFP01375 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.17■□□□□ 0.98
TNFP01375 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TNFP01375 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.17■□□□□ 0.98
TNFP01375 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.17■□□□□ 0.98
TNFP01375 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.17■□□□□ 0.98
TNFP01375 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms