Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 pRNA.6-201ENST00000610482 90 ntBASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 pRNA.5-201ENST00000612139 90 ntBASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 pRNA.11-201ENST00000618423 90 ntBASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 pRNA.13-201ENST00000619112 90 ntBASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 AL035685.1-201ENST00000636663 812 ntBASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV3A0A0B4J244 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 AC133637.1-201ENST00000624115 1537 ntBASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 AC241377.3-202ENST00000626088 1088 ntBASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 AC241585.3-202ENST00000628937 1088 ntBASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 AC245100.8-202ENST00000629247 1058 ntBASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV3A0A0B4J244 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 AC099791.2-201ENST00000605725 427 ntBASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV3A0A0B4J244 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV3A0A0B4J244 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 AL031602.1-201ENST00000633169 911 ntBASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms