Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 AC022517.1-201ENST00000592429 346 ntBASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 AL137784.2-201ENST00000607332 1000 ntBASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.31■■□□□ 1
PCDHGA4Q9Y5G9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 MIR3181-201ENST00000578512 73 ntBASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.3■■□□□ 1
PCDHGA4Q9Y5G9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 KRT18P5-201ENST00000436075 1291 ntBASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 YBX1P1-201ENST00000445822 960 ntBASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA4Q9Y5G9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 AL499627.2-201ENST00000606283 725 ntBASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA4Q9Y5G9 C1orf229-201ENST00000623686 2258 ntBASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 pRNA.6-201ENST00000610482 90 ntBASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 pRNA.5-201ENST00000612139 90 ntBASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 pRNA.11-201ENST00000618423 90 ntBASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 pRNA.13-201ENST00000619112 90 ntBASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 AL031602.1-201ENST00000633169 911 ntBASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.27■■□□□ 1
PCDHGA4Q9Y5G9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCDHGA4Q9Y5G9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.26■□□□□ 0.99
PCDHGA4Q9Y5G9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms