Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 AL512631.2-201ENST00000604634 923 ntBASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 AL031602.1-201ENST00000633169 911 ntBASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.62■□□□□ 0.73
HIF3AQ9Y2N7 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 SRD5A1P1-201ENST00000442297 786 ntBASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
HIF3AQ9Y2N7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 AL356441.2-201ENST00000443009 864 ntBASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 AC092171.4-201ENST00000609130 632 ntBASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HIF3AQ9Y2N7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 MIR3181-201ENST00000578512 73 ntBASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HIF3AQ9Y2N7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
HIF3AQ9Y2N7 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HIF3AQ9Y2N7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
HIF3AQ9Y2N7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HIF3AQ9Y2N7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HIF3AQ9Y2N7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 PKD1P6-201ENST00000343738 4769 ntBASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
HIF3AQ9Y2N7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HIF3AQ9Y2N7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms