Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 AC091305.1-201ENST00000479476 895 ntBASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 CA15P2-201ENST00000611168 834 ntBASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CUEDC1Q9NWM3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CUEDC1Q9NWM3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 RASA4CP-201ENST00000424092 1398 ntBASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 AP005435.1-201ENST00000529293 1178 ntBASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CUEDC1Q9NWM3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 AC080038.3-201ENST00000623346 1952 ntBASIC21■□□□□ 0.95
CUEDC1Q9NWM3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 GRAMD4P2-201ENST00000423297 1097 ntBASIC21■□□□□ 0.95
CUEDC1Q9NWM3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 AC068587.7-201ENST00000641602 218 ntBASIC21■□□□□ 0.95
CUEDC1Q9NWM3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 AC137767.1-201ENST00000602918 1920 ntBASIC21■□□□□ 0.95
CUEDC1Q9NWM3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
CUEDC1Q9NWM3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 AC127496.7-201ENST00000625110 1798 ntBASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CUEDC1Q9NWM3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 AC010141.3-201ENST00000456659 717 ntBASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 AL162430.1-201ENST00000480705 870 ntBASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CUEDC1Q9NWM3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 IGHV3-19-201ENST00000521488 291 ntBASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 AC087239.1-201ENST00000622671 572 ntBASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 GUSBP5-202ENST00000510805 1989 ntBASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 TSPY26P-201ENST00000476365 1326 ntBASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CUEDC1Q9NWM3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.96■□□□□ 0.95
CUEDC1Q9NWM3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CUEDC1Q9NWM3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CUEDC1Q9NWM3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
CUEDC1Q9NWM3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms