Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.83■□□□□ 0.92
CLHC1Q8NHS4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.83■□□□□ 0.92
CLHC1Q8NHS4 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLHC1Q8NHS4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.83■□□□□ 0.92
CLHC1Q8NHS4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CLHC1Q8NHS4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLHC1Q8NHS4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 GUSBP5-201ENST00000418136 578 ntBASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLHC1Q8NHS4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 CA15P2-201ENST00000611168 834 ntBASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 AC010542.4-201ENST00000563151 1910 ntBASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLHC1Q8NHS4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 AC099791.2-201ENST00000605725 427 ntBASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 pRNA.6-201ENST00000610482 90 ntBASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 pRNA.5-201ENST00000612139 90 ntBASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 pRNA.11-201ENST00000618423 90 ntBASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 pRNA.13-201ENST00000619112 90 ntBASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CLHC1Q8NHS4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 AC241377.3-202ENST00000626088 1088 ntBASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 AC241585.3-202ENST00000628937 1088 ntBASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 AC245100.8-202ENST00000629247 1058 ntBASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLHC1Q8NHS4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 FAM99A-202ENST00000538190 1989 ntBASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 AL356740.2-201ENST00000601559 647 ntBASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms