Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 C1orf229-201ENST00000623686 2258 ntBASIC20.14■□□□□ 0.81
RNF4P78317 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.14■□□□□ 0.81
RNF4P78317 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.14■□□□□ 0.81
RNF4P78317 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
RNF4P78317 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
RNF4P78317 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.14■□□□□ 0.81
RNF4P78317 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.14■□□□□ 0.81
RNF4P78317 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.14■□□□□ 0.81
RNF4P78317 RARRES2P6-201ENST00000567333 442 ntBASIC20.14■□□□□ 0.81
RNF4P78317 MIR6084-201ENST00000622012 110 ntBASIC20.14■□□□□ 0.81
RNF4P78317 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNF4P78317 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.14■□□□□ 0.81
RNF4P78317 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNF4P78317 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RNF4P78317 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.13■□□□□ 0.81
RNF4P78317 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
RNF4P78317 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.13■□□□□ 0.81
RNF4P78317 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.13■□□□□ 0.81
RNF4P78317 AC079089.2-201ENST00000531211 1277 ntBASIC20.13■□□□□ 0.81
RNF4P78317 SMUG1P1-201ENST00000590640 811 ntBASIC20.13■□□□□ 0.81
RNF4P78317 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.13■□□□□ 0.81
RNF4P78317 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNF4P78317 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNF4P78317 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.13■□□□□ 0.81
RNF4P78317 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNF4P78317 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RNF4P78317 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF4P78317 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.12■□□□□ 0.81
RNF4P78317 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RNF4P78317 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.12■□□□□ 0.81
RNF4P78317 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF4P78317 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RNF4P78317 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF4P78317 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.12■□□□□ 0.81
RNF4P78317 AC027612.3-201ENST00000413684 1047 ntBASIC20.12■□□□□ 0.81
RNF4P78317 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
RNF4P78317 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RNF4P78317 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF4P78317 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF4P78317 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF4P78317 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.11■□□□□ 0.81
RNF4P78317 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.11■□□□□ 0.81
RNF4P78317 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.11■□□□□ 0.81
RNF4P78317 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RNF4P78317 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF4P78317 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF4P78317 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RNF4P78317 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF4P78317 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RNF4P78317 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
RNF4P78317 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF4P78317 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RNF4P78317 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 AC026271.2-201ENST00000428091 497 ntBASIC20.1■□□□□ 0.81
RNF4P78317 AC097381.1-201ENST00000429019 1296 ntBASIC20.1■□□□□ 0.81
RNF4P78317 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF4P78317 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 MIR6821-201ENST00000617625 74 ntBASIC20.1■□□□□ 0.81
RNF4P78317 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF4P78317 ESRRAP2-201ENST00000418437 1549 ntBASIC20.1■□□□□ 0.81
RNF4P78317 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF4P78317 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RNF4P78317 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF4P78317 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF4P78317 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
RNF4P78317 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
RNF4P78317 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF4P78317 YBX1P1-201ENST00000445822 960 ntBASIC20.09■□□□□ 0.81
RNF4P78317 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF4P78317 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF4P78317 AC137767.1-201ENST00000602918 1920 ntBASIC20.09■□□□□ 0.81
RNF4P78317 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF4P78317 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF4P78317 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF4P78317 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF4P78317 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
RNF4P78317 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF4P78317 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF4P78317 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF4P78317 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF4P78317 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.08■□□□□ 0.81
RNF4P78317 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.08■□□□□ 0.81
RNF4P78317 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms