Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.67■□□□□ 0.9
LIM2P55344 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LIM2P55344 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIM2P55344 AC099791.1-201ENST00000416440 715 ntBASIC20.67■□□□□ 0.9
LIM2P55344 SUDS3P1-201ENST00000505831 966 ntBASIC20.67■□□□□ 0.9
LIM2P55344 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.67■□□□□ 0.9
LIM2P55344 AC005837.3-201ENST00000612163 286 ntBASIC20.67■□□□□ 0.9
LIM2P55344 AL136967.2-201ENST00000623968 743 ntBASIC20.67■□□□□ 0.9
LIM2P55344 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIM2P55344 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
LIM2P55344 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
LIM2P55344 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LIM2P55344 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIM2P55344 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LIM2P55344 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.66■□□□□ 0.9
LIM2P55344 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.66■□□□□ 0.9
LIM2P55344 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.66■□□□□ 0.9
LIM2P55344 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIM2P55344 AP005435.1-201ENST00000529293 1178 ntBASIC20.66■□□□□ 0.9
LIM2P55344 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LIM2P55344 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.66■□□□□ 0.9
LIM2P55344 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIM2P55344 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIM2P55344 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIM2P55344 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LIM2P55344 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIM2P55344 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
LIM2P55344 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIM2P55344 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIM2P55344 AC126544.1-201ENST00000580842 1059 ntBASIC20.65■□□□□ 0.9
LIM2P55344 CA15P2-201ENST00000611168 834 ntBASIC20.65■□□□□ 0.9
LIM2P55344 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIM2P55344 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIM2P55344 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIM2P55344 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIM2P55344 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIM2P55344 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIM2P55344 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIM2P55344 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIM2P55344 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIM2P55344 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.9
LIM2P55344 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.64■□□□□ 0.89
LIM2P55344 RASA4CP-201ENST00000424092 1398 ntBASIC20.64■□□□□ 0.89
LIM2P55344 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIM2P55344 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
LIM2P55344 AC142381.2-201ENST00000566120 298 ntBASIC20.64■□□□□ 0.89
LIM2P55344 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIM2P55344 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIM2P55344 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.64■□□□□ 0.89
LIM2P55344 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIM2P55344 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIM2P55344 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIM2P55344 AC127496.7-201ENST00000625110 1798 ntBASIC20.64■□□□□ 0.89
LIM2P55344 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.63■□□□□ 0.89
LIM2P55344 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.63■□□□□ 0.89
LIM2P55344 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
LIM2P55344 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIM2P55344 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 AC091305.1-201ENST00000479476 895 ntBASIC20.63■□□□□ 0.89
LIM2P55344 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 AC087239.1-201ENST00000622671 572 ntBASIC20.63■□□□□ 0.89
LIM2P55344 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.63■□□□□ 0.89
LIM2P55344 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIM2P55344 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LIM2P55344 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LIM2P55344 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LIM2P55344 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.62■□□□□ 0.89
LIM2P55344 AC010141.3-201ENST00000456659 717 ntBASIC20.62■□□□□ 0.89
LIM2P55344 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIM2P55344 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LIM2P55344 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LIM2P55344 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIM2P55344 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.61■□□□□ 0.89
LIM2P55344 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.61■□□□□ 0.89
LIM2P55344 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms