Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 AC019069.1-201ENST00000610008 1333 ntBASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV41A0A0B4J266 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 AC079089.2-201ENST00000531211 1277 ntBASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV41A0A0B4J266 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV41A0A0B4J266 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV41A0A0B4J266 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.08■□□□□ 0.33
TRAV41A0A0B4J266 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 AC012676.1-201ENST00000574705 1949 ntBASIC17.08■□□□□ 0.32
TRAV41A0A0B4J266 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 AC127496.7-201ENST00000625110 1798 ntBASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 IRS3P-201ENST00000223076 1006 ntBASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 MIR572-201ENST00000384983 95 ntBASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV41A0A0B4J266 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV41A0A0B4J266 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms