Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC41.84■■■■■ 4.29
SHROOM4Q9ULL8 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 DET1-205ENST00000558413 583 ntTSL 4 BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC41.83■■■■■ 4.29
SHROOM4Q9ULL8 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC41.82■■■■■ 4.29
SHROOM4Q9ULL8 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC41.82■■■■■ 4.29
SHROOM4Q9ULL8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC41.82■■■■■ 4.28
SHROOM4Q9ULL8 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC41.81■■■■■ 4.28
SHROOM4Q9ULL8 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC41.81■■■■■ 4.28
SHROOM4Q9ULL8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC41.81■■■■■ 4.28
SHROOM4Q9ULL8 AC069152.1-201ENST00000438030 544 ntBASIC41.81■■■■■ 4.28
SHROOM4Q9ULL8 TFG-210ENST00000620299 1289 ntTSL 5 BASIC41.81■■■■■ 4.28
SHROOM4Q9ULL8 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC41.81■■■■■ 4.28
SHROOM4Q9ULL8 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC41.8■■■■■ 4.28
SHROOM4Q9ULL8 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC41.8■■■■■ 4.28
SHROOM4Q9ULL8 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC41.8■■■■■ 4.28
SHROOM4Q9ULL8 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC41.8■■■■■ 4.28
SHROOM4Q9ULL8 STX4-202ENST00000394998 1498 ntTSL 2 BASIC41.8■■■■■ 4.28
SHROOM4Q9ULL8 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC41.8■■■■■ 4.28
SHROOM4Q9ULL8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 AC004687.1-201ENST00000579003 1625 ntBASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC41.79■■■■■ 4.28
SHROOM4Q9ULL8 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC41.78■■■■■ 4.28
SHROOM4Q9ULL8 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC41.78■■■■■ 4.28
SHROOM4Q9ULL8 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC41.78■■■■■ 4.28
SHROOM4Q9ULL8 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC41.78■■■■■ 4.28
SHROOM4Q9ULL8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC41.78■■■■■ 4.28
SHROOM4Q9ULL8 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC41.77■■■■■ 4.28
SHROOM4Q9ULL8 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC41.77■■■■■ 4.28
SHROOM4Q9ULL8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC41.77■■■■■ 4.28
SHROOM4Q9ULL8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC41.77■■■■■ 4.28
SHROOM4Q9ULL8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC41.77■■■■■ 4.28
SHROOM4Q9ULL8 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC41.77■■■■■ 4.28
SHROOM4Q9ULL8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC41.76■■■■■ 4.28
SHROOM4Q9ULL8 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC41.76■■■■■ 4.28
SHROOM4Q9ULL8 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC41.76■■■■■ 4.28
SHROOM4Q9ULL8 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC41.76■■■■■ 4.27
SHROOM4Q9ULL8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC41.76■■■■■ 4.27
SHROOM4Q9ULL8 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC41.75■■■■■ 4.27
SHROOM4Q9ULL8 METTL15-202ENST00000403099 795 ntTSL 5 BASIC41.74■■■■■ 4.27
SHROOM4Q9ULL8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC41.74■■■■■ 4.27
SHROOM4Q9ULL8 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC41.74■■■■■ 4.27
SHROOM4Q9ULL8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC41.74■■■■■ 4.27
SHROOM4Q9ULL8 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 AC073210.2-201ENST00000430369 194 ntBASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 AL353803.4-201ENST00000565882 1934 ntBASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC41.73■■■■■ 4.27
SHROOM4Q9ULL8 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC41.72■■■■■ 4.27
SHROOM4Q9ULL8 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC41.71■■■■■ 4.27
SHROOM4Q9ULL8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC41.71■■■■■ 4.27
SHROOM4Q9ULL8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC41.71■■■■■ 4.27
SHROOM4Q9ULL8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC41.71■■■■■ 4.27
SHROOM4Q9ULL8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 SPI1-203ENST00000533030 661 ntTSL 2 BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC41.7■■■■■ 4.27
SHROOM4Q9ULL8 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC41.7■■■■■ 4.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms