Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CISHQ9NSE2 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
CISHQ9NSE2 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 AC137767.1-201ENST00000602918 1920 ntBASIC23.33■■□□□ 1.33
CISHQ9NSE2 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.33
CISHQ9NSE2 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.33■■□□□ 1.33
CISHQ9NSE2 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 AC126544.1-201ENST00000580842 1059 ntBASIC23.33■■□□□ 1.33
CISHQ9NSE2 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CISHQ9NSE2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CISHQ9NSE2 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 RASA4CP-201ENST00000424092 1398 ntBASIC23.32■■□□□ 1.32
CISHQ9NSE2 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 AC091305.1-201ENST00000479476 895 ntBASIC23.32■■□□□ 1.32
CISHQ9NSE2 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.32■■□□□ 1.32
CISHQ9NSE2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CISHQ9NSE2 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 GUSBP5-202ENST00000510805 1989 ntBASIC23.32■■□□□ 1.32
CISHQ9NSE2 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CISHQ9NSE2 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CISHQ9NSE2 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.31■■□□□ 1.32
CISHQ9NSE2 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.31■■□□□ 1.32
CISHQ9NSE2 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CISHQ9NSE2 AC080038.3-201ENST00000623346 1952 ntBASIC23.31■■□□□ 1.32
CISHQ9NSE2 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CISHQ9NSE2 AC010141.3-201ENST00000456659 717 ntBASIC23.31■■□□□ 1.32
CISHQ9NSE2 AC142381.2-201ENST00000566120 298 ntBASIC23.31■■□□□ 1.32
CISHQ9NSE2 AC087239.1-201ENST00000622671 572 ntBASIC23.31■■□□□ 1.32
CISHQ9NSE2 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CISHQ9NSE2 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CISHQ9NSE2 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CISHQ9NSE2 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
CISHQ9NSE2 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CISHQ9NSE2 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CISHQ9NSE2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.3■■□□□ 1.32
CISHQ9NSE2 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CISHQ9NSE2 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CISHQ9NSE2 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CISHQ9NSE2 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CISHQ9NSE2 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.3■■□□□ 1.32
CISHQ9NSE2 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CISHQ9NSE2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CISHQ9NSE2 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC23.3■■□□□ 1.32
CISHQ9NSE2 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
CISHQ9NSE2 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
CISHQ9NSE2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.29■■□□□ 1.32
CISHQ9NSE2 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CISHQ9NSE2 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CISHQ9NSE2 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
CISHQ9NSE2 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
CISHQ9NSE2 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.28■■□□□ 1.32
CISHQ9NSE2 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.28■■□□□ 1.32
CISHQ9NSE2 IGHV3-19-201ENST00000521488 291 ntBASIC23.28■■□□□ 1.32
CISHQ9NSE2 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.28■■□□□ 1.32
CISHQ9NSE2 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CISHQ9NSE2 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CISHQ9NSE2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CISHQ9NSE2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
CISHQ9NSE2 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CISHQ9NSE2 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CISHQ9NSE2 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CISHQ9NSE2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.27■■□□□ 1.32
CISHQ9NSE2 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.27■■□□□ 1.32
CISHQ9NSE2 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CISHQ9NSE2 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
CISHQ9NSE2 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CISHQ9NSE2 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.27■■□□□ 1.32
CISHQ9NSE2 AL117328.2-201ENST00000624617 1940 ntBASIC23.27■■□□□ 1.32
CISHQ9NSE2 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.27■■□□□ 1.32
CISHQ9NSE2 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
CISHQ9NSE2 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.26■■□□□ 1.31
CISHQ9NSE2 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CISHQ9NSE2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CISHQ9NSE2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CISHQ9NSE2 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CISHQ9NSE2 AC139530.1-201ENST00000575312 1977 ntBASIC23.26■■□□□ 1.31
CISHQ9NSE2 OXCT2P1-201ENST00000447263 1535 ntBASIC23.26■■□□□ 1.31
CISHQ9NSE2 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.26■■□□□ 1.31
CISHQ9NSE2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms