Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHANK3Q9BYB0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHANK3Q9BYB0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SHANK3Q9BYB0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SHANK3Q9BYB0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 CNN2P6-201ENST00000439038 900 ntBASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 MIR4651-201ENST00000582622 73 ntBASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC28.69■■■□□ 2.18
SHANK3Q9BYB0 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC28.68■■■□□ 2.18
SHANK3Q9BYB0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHANK3Q9BYB0 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC28.67■■■□□ 2.18
SHANK3Q9BYB0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
SHANK3Q9BYB0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC28.67■■■□□ 2.18
SHANK3Q9BYB0 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
SHANK3Q9BYB0 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHANK3Q9BYB0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 AC004812.2-201ENST00000611079 2094 ntBASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 ASL-203ENST00000380839 1765 ntTSL 5 BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 GPX1P1-201ENST00000388829 606 ntBASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHANK3Q9BYB0 AL353803.4-201ENST00000565882 1934 ntBASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 AC020928.2-201ENST00000588717 2197 ntBASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 MYCNOS-205ENST00000641950 531 ntBASIC28.65■■■□□ 2.18
SHANK3Q9BYB0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SHANK3Q9BYB0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC28.64■■■□□ 2.17
SHANK3Q9BYB0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHANK3Q9BYB0 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 OAS3-207ENST00000551007 998 ntTSL 2 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 DUSP8P3-201ENST00000399571 1760 ntBASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC28.62■■■□□ 2.17
SHANK3Q9BYB0 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHANK3Q9BYB0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHANK3Q9BYB0 TSPY6P-201ENST00000448518 926 ntBASIC28.61■■■□□ 2.17
SHANK3Q9BYB0 KRT18P6-201ENST00000555540 1265 ntBASIC28.61■■■□□ 2.17
SHANK3Q9BYB0 AL138781.1-201ENST00000566567 1274 ntBASIC28.61■■■□□ 2.17
SHANK3Q9BYB0 AC231657.2-201ENST00000624556 255 ntBASIC28.61■■■□□ 2.17
SHANK3Q9BYB0 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms