Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USF3Q68DE3 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF3Q68DE3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF3Q68DE3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
USF3Q68DE3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
USF3Q68DE3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF3Q68DE3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.77■□□□□ 0.6
USF3Q68DE3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.77■□□□□ 0.6
USF3Q68DE3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.77■□□□□ 0.6
USF3Q68DE3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF3Q68DE3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF3Q68DE3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USF3Q68DE3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
USF3Q68DE3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.77■□□□□ 0.6
USF3Q68DE3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
USF3Q68DE3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.77■□□□□ 0.59
USF3Q68DE3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
USF3Q68DE3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
USF3Q68DE3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.77■□□□□ 0.59
USF3Q68DE3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USF3Q68DE3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USF3Q68DE3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USF3Q68DE3 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.76■□□□□ 0.59
USF3Q68DE3 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
USF3Q68DE3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USF3Q68DE3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USF3Q68DE3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
USF3Q68DE3 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USF3Q68DE3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.76■□□□□ 0.59
USF3Q68DE3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
USF3Q68DE3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USF3Q68DE3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.75■□□□□ 0.59
USF3Q68DE3 AC012676.1-201ENST00000574705 1949 ntBASIC18.75■□□□□ 0.59
USF3Q68DE3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF3Q68DE3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
USF3Q68DE3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.75■□□□□ 0.59
USF3Q68DE3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF3Q68DE3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.75■□□□□ 0.59
USF3Q68DE3 TPRG1LP1-201ENST00000598702 760 ntBASIC18.75■□□□□ 0.59
USF3Q68DE3 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.75■□□□□ 0.59
USF3Q68DE3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
USF3Q68DE3 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.75■□□□□ 0.59
USF3Q68DE3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF3Q68DE3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USF3Q68DE3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
USF3Q68DE3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.74■□□□□ 0.59
USF3Q68DE3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 DUX4L4-201ENST00000566884 1269 ntBASIC18.74■□□□□ 0.59
USF3Q68DE3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.74■□□□□ 0.59
USF3Q68DE3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.74■□□□□ 0.59
USF3Q68DE3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
USF3Q68DE3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
USF3Q68DE3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
USF3Q68DE3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.74■□□□□ 0.59
USF3Q68DE3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.74■□□□□ 0.59
USF3Q68DE3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF3Q68DE3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 RAP2CP1-201ENST00000605103 478 ntBASIC18.73■□□□□ 0.59
USF3Q68DE3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.73■□□□□ 0.59
USF3Q68DE3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.73■□□□□ 0.59
USF3Q68DE3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USF3Q68DE3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.73■□□□□ 0.59
USF3Q68DE3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.73■□□□□ 0.59
USF3Q68DE3 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.73■□□□□ 0.59
USF3Q68DE3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
USF3Q68DE3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USF3Q68DE3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.72■□□□□ 0.59
USF3Q68DE3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.72■□□□□ 0.59
USF3Q68DE3 AC137761.2-201ENST00000561729 223 ntBASIC18.72■□□□□ 0.59
USF3Q68DE3 AC145350.3-201ENST00000569033 163 ntBASIC18.72■□□□□ 0.59
USF3Q68DE3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USF3Q68DE3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms