Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HOXD3P31249 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.87■□□□□ 0.29
HOXD3P31249 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXD3P31249 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
HOXD3P31249 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXD3P31249 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HOXD3P31249 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXD3P31249 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.86■□□□□ 0.29
HOXD3P31249 AC004911.1-201ENST00000416316 871 ntBASIC16.86■□□□□ 0.29
HOXD3P31249 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.86■□□□□ 0.29
HOXD3P31249 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 AP005435.1-201ENST00000529293 1178 ntBASIC16.86■□□□□ 0.29
HOXD3P31249 AC012414.1-201ENST00000556676 535 ntBASIC16.86■□□□□ 0.29
HOXD3P31249 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXD3P31249 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXD3P31249 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HOXD3P31249 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXD3P31249 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXD3P31249 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXD3P31249 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HOXD3P31249 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HOXD3P31249 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 MIR572-201ENST00000384983 95 ntBASIC16.85■□□□□ 0.29
HOXD3P31249 AC027612.3-201ENST00000413684 1047 ntBASIC16.85■□□□□ 0.29
HOXD3P31249 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXD3P31249 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXD3P31249 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXD3P31249 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXD3P31249 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXD3P31249 AC092437.1-201ENST00000624794 1048 ntBASIC16.85■□□□□ 0.29
HOXD3P31249 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXD3P31249 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HOXD3P31249 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXD3P31249 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXD3P31249 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
HOXD3P31249 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXD3P31249 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXD3P31249 AC068587.7-201ENST00000641602 218 ntBASIC16.84■□□□□ 0.29
HOXD3P31249 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HOXD3P31249 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXD3P31249 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXD3P31249 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXD3P31249 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXD3P31249 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXD3P31249 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD3P31249 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HOXD3P31249 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD3P31249 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.83■□□□□ 0.28
HOXD3P31249 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD3P31249 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD3P31249 EI24-211ENST00000534546 1544 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXD3P31249 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HOXD3P31249 CCDC92B-201ENST00000575506 885 ntBASIC16.83■□□□□ 0.28
HOXD3P31249 AL354811.1-201ENST00000610286 706 ntBASIC16.83■□□□□ 0.28
HOXD3P31249 AC087239.1-201ENST00000622671 572 ntBASIC16.83■□□□□ 0.28
HOXD3P31249 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.83■□□□□ 0.28
HOXD3P31249 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXD3P31249 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
HOXD3P31249 AC123595.1-201ENST00000440769 1046 ntBASIC16.82■□□□□ 0.28
HOXD3P31249 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXD3P31249 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXD3P31249 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HOXD3P31249 CASK-201ENST00000378154 2494 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXD3P31249 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXD3P31249 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms