Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A1P20908 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A1P20908 AC079140.4-201ENST00000507448 529 ntBASIC21.21■□□□□ 0.99
COL5A1P20908 SLC7A5P2-201ENST00000553010 536 ntBASIC21.21■□□□□ 0.99
COL5A1P20908 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A1P20908 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A1P20908 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A1P20908 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A1P20908 KRT87P-202ENST00000534226 1464 ntBASIC21.21■□□□□ 0.99
COL5A1P20908 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A1P20908 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
COL5A1P20908 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.2■□□□□ 0.99
COL5A1P20908 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A1P20908 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A1P20908 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
COL5A1P20908 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
COL5A1P20908 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A1P20908 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A1P20908 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.2■□□□□ 0.98
COL5A1P20908 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A1P20908 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A1P20908 GPX1P1-201ENST00000388829 606 ntBASIC21.2■□□□□ 0.98
COL5A1P20908 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A1P20908 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A1P20908 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.19■□□□□ 0.98
COL5A1P20908 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.19■□□□□ 0.98
COL5A1P20908 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A1P20908 GUSBP6-202ENST00000438529 1198 ntBASIC21.19■□□□□ 0.98
COL5A1P20908 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.19■□□□□ 0.98
COL5A1P20908 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL5A1P20908 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.19■□□□□ 0.98
COL5A1P20908 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
COL5A1P20908 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A1P20908 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.18■□□□□ 0.98
COL5A1P20908 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.18■□□□□ 0.98
COL5A1P20908 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
COL5A1P20908 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.18■□□□□ 0.98
COL5A1P20908 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.18■□□□□ 0.98
COL5A1P20908 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL5A1P20908 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
COL5A1P20908 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A1P20908 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A1P20908 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A1P20908 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A1P20908 AC005224.4-201ENST00000583262 1652 ntBASIC21.18■□□□□ 0.98
COL5A1P20908 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A1P20908 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.18■□□□□ 0.98
COL5A1P20908 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.18■□□□□ 0.98
COL5A1P20908 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.18■□□□□ 0.98
COL5A1P20908 AC231657.2-201ENST00000624556 255 ntBASIC21.18■□□□□ 0.98
COL5A1P20908 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A1P20908 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A1P20908 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A1P20908 AC093323.1-202ENST00000635031 2045 ntBASIC21.17■□□□□ 0.98
COL5A1P20908 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A1P20908 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A1P20908 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.17■□□□□ 0.98
COL5A1P20908 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.17■□□□□ 0.98
COL5A1P20908 AC004812.2-201ENST00000611079 2094 ntBASIC21.17■□□□□ 0.98
COL5A1P20908 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.16■□□□□ 0.98
COL5A1P20908 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A1P20908 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
COL5A1P20908 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
COL5A1P20908 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.16■□□□□ 0.98
COL5A1P20908 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A1P20908 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A1P20908 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.15■□□□□ 0.98
COL5A1P20908 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL5A1P20908 DUX4L16-201ENST00000555130 1264 ntBASIC21.15■□□□□ 0.98
COL5A1P20908 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A1P20908 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.15■□□□□ 0.98
COL5A1P20908 AC104187.1-201ENST00000607510 612 ntBASIC21.15■□□□□ 0.98
COL5A1P20908 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A1P20908 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A1P20908 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A1P20908 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A1P20908 UBE2DNL-204ENST00000602536 740 ntBASIC21.15■□□□□ 0.98
COL5A1P20908 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.15■□□□□ 0.98
COL5A1P20908 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A1P20908 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL5A1P20908 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.14■□□□□ 0.98
COL5A1P20908 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A1P20908 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A1P20908 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
COL5A1P20908 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.14■□□□□ 0.97
COL5A1P20908 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.14■□□□□ 0.97
COL5A1P20908 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.14■□□□□ 0.97
COL5A1P20908 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.14■□□□□ 0.97
COL5A1P20908 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A1P20908 ABCB10P4-201ENST00000566803 2184 ntBASIC21.14■□□□□ 0.97
COL5A1P20908 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A1P20908 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.14■□□□□ 0.97
COL5A1P20908 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A1P20908 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.13■□□□□ 0.97
COL5A1P20908 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms