Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 AC010141.3-201ENST00000456659 717 ntBASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 IGHV3-19-201ENST00000521488 291 ntBASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV41A0A0B4J266 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 ESRRAP2-201ENST00000418437 1549 ntBASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 AC068473.5-201ENST00000616428 2072 ntBASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 TSPY26P-201ENST00000476365 1326 ntBASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV41A0A0B4J266 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRAV41A0A0B4J266 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 AC087742.1-201ENST00000575880 1738 ntBASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 AC105265.2-201ENST00000467189 838 ntBASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV41A0A0B4J266 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRAV41A0A0B4J266 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV41A0A0B4J266 OXCT2P1-201ENST00000447263 1535 ntBASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV41A0A0B4J266 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms