Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC079140.4-201ENST00000507448 529 ntBASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 CD99P1-205ENST00000527459 561 ntBASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 AC142086.2-201ENST00000569753 217 ntBASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA1Q9Y5H4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHGA1Q9Y5H4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHGA1Q9Y5H4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHGA1Q9Y5H4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PCDHGA1Q9Y5H4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDHGA1Q9Y5H4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHGA1Q9Y5H4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 AL121832.2-201ENST00000610979 668 ntBASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 AC022211.4-201ENST00000625094 2161 ntBASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA1Q9Y5H4 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHGA1Q9Y5H4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 MFSD11-216ENST00000590393 1141 ntBASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 AC231657.2-201ENST00000624556 255 ntBASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
PCDHGA1Q9Y5H4 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHGA1Q9Y5H4 OXCT2P1-201ENST00000447263 1535 ntBASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 AC004687.1-201ENST00000579003 1625 ntBASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHGA1Q9Y5H4 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms