Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VMP1Q96GC9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VMP1Q96GC9 MIR638-201ENST00000385237 100 ntBASIC20.84■□□□□ 0.93
VMP1Q96GC9 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.84■□□□□ 0.93
VMP1Q96GC9 AL138724.1-201ENST00000606771 1088 ntBASIC20.84■□□□□ 0.93
VMP1Q96GC9 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VMP1Q96GC9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VMP1Q96GC9 FP325331.1-202ENST00000623531 1380 ntBASIC20.84■□□□□ 0.93
VMP1Q96GC9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.84■□□□□ 0.93
VMP1Q96GC9 SLC25A24-204ENST00000569674 2357 ntBASIC20.83■□□□□ 0.93
VMP1Q96GC9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VMP1Q96GC9 AC007375.3-201ENST00000600936 2314 ntBASIC20.83■□□□□ 0.93
VMP1Q96GC9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VMP1Q96GC9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VMP1Q96GC9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.83■□□□□ 0.93
VMP1Q96GC9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VMP1Q96GC9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.83■□□□□ 0.93
VMP1Q96GC9 SERBP1P1-201ENST00000396021 1160 ntBASIC20.83■□□□□ 0.93
VMP1Q96GC9 AC006455.2-201ENST00000429931 906 ntBASIC20.83■□□□□ 0.93
VMP1Q96GC9 AC133561.4-201ENST00000566112 224 ntBASIC20.83■□□□□ 0.93
VMP1Q96GC9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VMP1Q96GC9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VMP1Q96GC9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VMP1Q96GC9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VMP1Q96GC9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VMP1Q96GC9 AC144652.1-201ENST00000609974 1624 ntBASIC20.82■□□□□ 0.92
VMP1Q96GC9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 AC024257.2-201ENST00000549699 147 ntBASIC20.82■□□□□ 0.92
VMP1Q96GC9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VMP1Q96GC9 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.82■□□□□ 0.92
VMP1Q96GC9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 AC011298.3-201ENST00000615796 283 ntBASIC20.81■□□□□ 0.92
VMP1Q96GC9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
VMP1Q96GC9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VMP1Q96GC9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.8■□□□□ 0.92
VMP1Q96GC9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
VMP1Q96GC9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.8■□□□□ 0.92
VMP1Q96GC9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VMP1Q96GC9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VMP1Q96GC9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
VMP1Q96GC9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
VMP1Q96GC9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
VMP1Q96GC9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VMP1Q96GC9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VMP1Q96GC9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VMP1Q96GC9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VMP1Q96GC9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
VMP1Q96GC9 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 DUX4L4-201ENST00000566884 1269 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VMP1Q96GC9 MIR3181-201ENST00000578512 73 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 pRNA.6-201ENST00000610482 90 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 pRNA.5-201ENST00000612139 90 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 pRNA.11-201ENST00000618423 90 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 pRNA.13-201ENST00000619112 90 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VMP1Q96GC9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 LINC01529-204ENST00000636474 1715 ntBASIC20.78■□□□□ 0.92
VMP1Q96GC9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
VMP1Q96GC9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms