Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC24.49■■□□□ 1.51
CCDC60Q8IWA6 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC60Q8IWA6 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC60Q8IWA6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.48■■□□□ 1.51
CCDC60Q8IWA6 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC60Q8IWA6 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
CCDC60Q8IWA6 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L2-201ENST00000561772 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L6-201ENST00000626483 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L1-201ENST00000627662 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L8-201ENST00000629013 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L3-201ENST00000630187 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L7-201ENST00000630678 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 DUX4L5-201ENST00000630834 1275 ntBASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC60Q8IWA6 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 AC034268.1-201ENST00000441047 882 ntBASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 AC087239.1-201ENST00000622671 572 ntBASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC60Q8IWA6 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.51
CCDC60Q8IWA6 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CCDC60Q8IWA6 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
CCDC60Q8IWA6 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CCDC60Q8IWA6 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC60Q8IWA6 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.45■■□□□ 1.5
CCDC60Q8IWA6 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.45■■□□□ 1.5
CCDC60Q8IWA6 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC60Q8IWA6 AC092666.2-201ENST00000613287 246 ntBASIC24.45■■□□□ 1.5
CCDC60Q8IWA6 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.45■■□□□ 1.5
CCDC60Q8IWA6 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 CCDC92B-201ENST00000575506 885 ntBASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 AC104564.3-201ENST00000582367 638 ntBASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.44■■□□□ 1.5
CCDC60Q8IWA6 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 SMUG1P1-201ENST00000590640 811 ntBASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 OXCT2P1-201ENST00000447263 1535 ntBASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC24.43■■□□□ 1.5
CCDC60Q8IWA6 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 TERF1P2-201ENST00000583350 1212 ntBASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC24.42■■□□□ 1.5
CCDC60Q8IWA6 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 LINC01960-201ENST00000563759 1884 ntBASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.41■■□□□ 1.5
CCDC60Q8IWA6 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.4■■□□□ 1.5
CCDC60Q8IWA6 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms