Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 AC104564.3-201ENST00000582367 638 ntBASIC21.79■■□□□ 1.08
LRRK1Q38SD2 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 KRT18P5-201ENST00000436075 1291 ntBASIC21.78■■□□□ 1.08
LRRK1Q38SD2 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRK1Q38SD2 DUSP8P5-201ENST00000422884 1815 ntBASIC21.77■■□□□ 1.08
LRRK1Q38SD2 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.77■■□□□ 1.08
LRRK1Q38SD2 AC123595.1-201ENST00000440769 1046 ntBASIC21.77■■□□□ 1.07
LRRK1Q38SD2 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
LRRK1Q38SD2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.77■■□□□ 1.07
LRRK1Q38SD2 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
LRRK1Q38SD2 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.76■■□□□ 1.07
LRRK1Q38SD2 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 MIR5787-201ENST00000611784 55 ntBASIC21.76■■□□□ 1.07
LRRK1Q38SD2 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRK1Q38SD2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 AL162430.1-201ENST00000480705 870 ntBASIC21.75■■□□□ 1.07
LRRK1Q38SD2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 CCDC92B-201ENST00000575506 885 ntBASIC21.75■■□□□ 1.07
LRRK1Q38SD2 AC092666.2-201ENST00000613287 246 ntBASIC21.75■■□□□ 1.07
LRRK1Q38SD2 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.75■■□□□ 1.07
LRRK1Q38SD2 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
LRRK1Q38SD2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
LRRK1Q38SD2 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRK1Q38SD2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.74■■□□□ 1.07
LRRK1Q38SD2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRK1Q38SD2 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.74■■□□□ 1.07
LRRK1Q38SD2 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 TERF1P2-201ENST00000583350 1212 ntBASIC21.73■■□□□ 1.07
LRRK1Q38SD2 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRRK1Q38SD2 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 YBX1P1-201ENST00000445822 960 ntBASIC21.72■■□□□ 1.07
LRRK1Q38SD2 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 AC010141.3-201ENST00000456659 717 ntBASIC21.72■■□□□ 1.07
LRRK1Q38SD2 SMUG1P1-201ENST00000590640 811 ntBASIC21.72■■□□□ 1.07
LRRK1Q38SD2 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRK1Q38SD2 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms