Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.23■□□□□ 0.99
FOXA1P55317 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.23■□□□□ 0.99
FOXA1P55317 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.22■□□□□ 0.99
FOXA1P55317 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXA1P55317 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
FOXA1P55317 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXA1P55317 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FOXA1P55317 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.22■□□□□ 0.99
FOXA1P55317 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
FOXA1P55317 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.21■□□□□ 0.99
FOXA1P55317 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 UNC93B8-201ENST00000511903 705 ntBASIC21.21■□□□□ 0.99
FOXA1P55317 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.21■□□□□ 0.99
FOXA1P55317 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.21■□□□□ 0.99
FOXA1P55317 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXA1P55317 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.2■□□□□ 0.99
FOXA1P55317 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA1P55317 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.2■□□□□ 0.98
FOXA1P55317 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA1P55317 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA1P55317 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA1P55317 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.2■□□□□ 0.98
FOXA1P55317 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA1P55317 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
FOXA1P55317 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA1P55317 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.2■□□□□ 0.98
FOXA1P55317 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXA1P55317 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.2■□□□□ 0.98
FOXA1P55317 AC010542.4-201ENST00000563151 1910 ntBASIC21.19■□□□□ 0.98
FOXA1P55317 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.19■□□□□ 0.98
FOXA1P55317 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA1P55317 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
FOXA1P55317 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA1P55317 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.19■□□□□ 0.98
FOXA1P55317 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.19■□□□□ 0.98
FOXA1P55317 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.19■□□□□ 0.98
FOXA1P55317 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA1P55317 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA1P55317 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA1P55317 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXA1P55317 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXA1P55317 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
FOXA1P55317 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXA1P55317 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
FOXA1P55317 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA1P55317 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXA1P55317 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
FOXA1P55317 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.17■□□□□ 0.98
FOXA1P55317 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 CA15P2-201ENST00000611168 834 ntBASIC21.17■□□□□ 0.98
FOXA1P55317 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
FOXA1P55317 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.17■□□□□ 0.98
FOXA1P55317 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA1P55317 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
FOXA1P55317 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.16■□□□□ 0.98
FOXA1P55317 FAM99A-202ENST00000538190 1989 ntBASIC21.16■□□□□ 0.98
FOXA1P55317 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
FOXA1P55317 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXA1P55317 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXA1P55317 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXA1P55317 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.16■□□□□ 0.98
FOXA1P55317 AL499627.2-201ENST00000606283 725 ntBASIC21.16■□□□□ 0.98
FOXA1P55317 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXA1P55317 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXA1P55317 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXA1P55317 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
FOXA1P55317 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
FOXA1P55317 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
FOXA1P55317 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA1P55317 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms