Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.57■□□□□ 0.56
PDLIM4P50479 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.57■□□□□ 0.56
PDLIM4P50479 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM4P50479 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PDLIM4P50479 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM4P50479 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PDLIM4P50479 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM4P50479 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PDLIM4P50479 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM4P50479 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM4P50479 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
PDLIM4P50479 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.56■□□□□ 0.56
PDLIM4P50479 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.56■□□□□ 0.56
PDLIM4P50479 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.56■□□□□ 0.56
PDLIM4P50479 KRT18P14-201ENST00000534205 1250 ntBASIC18.56■□□□□ 0.56
PDLIM4P50479 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.56■□□□□ 0.56
PDLIM4P50479 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.56■□□□□ 0.56
PDLIM4P50479 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.56■□□□□ 0.56
PDLIM4P50479 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.56■□□□□ 0.56
PDLIM4P50479 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM4P50479 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
PDLIM4P50479 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.55■□□□□ 0.56
PDLIM4P50479 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
PDLIM4P50479 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.55■□□□□ 0.56
PDLIM4P50479 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.55■□□□□ 0.56
PDLIM4P50479 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 IKBKGP1-201ENST00000612193 1073 ntBASIC18.55■□□□□ 0.56
PDLIM4P50479 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM4P50479 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM4P50479 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM4P50479 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM4P50479 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.54■□□□□ 0.56
PDLIM4P50479 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.54■□□□□ 0.56
PDLIM4P50479 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM4P50479 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.54■□□□□ 0.56
PDLIM4P50479 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.54■□□□□ 0.56
PDLIM4P50479 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.54■□□□□ 0.56
PDLIM4P50479 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.54■□□□□ 0.56
PDLIM4P50479 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.54■□□□□ 0.56
PDLIM4P50479 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM4P50479 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.54■□□□□ 0.56
PDLIM4P50479 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.54■□□□□ 0.56
PDLIM4P50479 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.54■□□□□ 0.56
PDLIM4P50479 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.54■□□□□ 0.56
PDLIM4P50479 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PDLIM4P50479 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM4P50479 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PDLIM4P50479 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
PDLIM4P50479 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PDLIM4P50479 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.53■□□□□ 0.56
PDLIM4P50479 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PDLIM4P50479 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PDLIM4P50479 TERF1P2-201ENST00000583350 1212 ntBASIC18.53■□□□□ 0.56
PDLIM4P50479 NTF6G-201ENST00000591094 616 ntBASIC18.53■□□□□ 0.56
PDLIM4P50479 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
PDLIM4P50479 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.52■□□□□ 0.56
PDLIM4P50479 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.52■□□□□ 0.56
PDLIM4P50479 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
PDLIM4P50479 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PDLIM4P50479 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.52■□□□□ 0.56
PDLIM4P50479 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PDLIM4P50479 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PDLIM4P50479 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.52■□□□□ 0.56
PDLIM4P50479 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.52■□□□□ 0.56
PDLIM4P50479 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.52■□□□□ 0.56
PDLIM4P50479 AC087239.1-201ENST00000622671 572 ntBASIC18.52■□□□□ 0.56
PDLIM4P50479 RARRES2P11-201ENST00000635158 484 ntBASIC18.52■□□□□ 0.56
PDLIM4P50479 AC068587.7-201ENST00000641602 218 ntBASIC18.52■□□□□ 0.56
PDLIM4P50479 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM4P50479 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PDLIM4P50479 LINC01124-201ENST00000409786 2117 ntBASIC18.52■□□□□ 0.55
PDLIM4P50479 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PDLIM4P50479 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PDLIM4P50479 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms