Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC142086.2-201ENST00000569753 217 ntBASIC28.09■■■□□ 2.09
COL5A3P25940 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC28.09■■■□□ 2.09
COL5A3P25940 UBE2DNL-204ENST00000602536 740 ntBASIC28.09■■■□□ 2.09
COL5A3P25940 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
COL5A3P25940 METTL15-202ENST00000403099 795 ntTSL 5 BASIC28.09■■■□□ 2.09
COL5A3P25940 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC28.09■■■□□ 2.09
COL5A3P25940 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC28.09■■■□□ 2.09
COL5A3P25940 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL5A3P25940 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL5A3P25940 APTR-205ENST00000447009 902 ntTSL 2 BASIC28.08■■■□□ 2.09
COL5A3P25940 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC28.08■■■□□ 2.09
COL5A3P25940 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC28.08■■■□□ 2.09
COL5A3P25940 AC079140.4-201ENST00000507448 529 ntBASIC28.08■■■□□ 2.09
COL5A3P25940 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC28.08■■■□□ 2.09
COL5A3P25940 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.08■■■□□ 2.09
COL5A3P25940 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC28.07■■■□□ 2.08
COL5A3P25940 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.07■■■□□ 2.08
COL5A3P25940 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
COL5A3P25940 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC28.07■■■□□ 2.08
COL5A3P25940 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC28.07■■■□□ 2.08
COL5A3P25940 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
COL5A3P25940 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL5A3P25940 AC005224.4-201ENST00000583262 1652 ntBASIC28.07■■■□□ 2.08
COL5A3P25940 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
COL5A3P25940 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC28.07■■■□□ 2.08
COL5A3P25940 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
COL5A3P25940 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC28.06■■■□□ 2.08
COL5A3P25940 TESC-206ENST00000541210 936 ntTSL 3 BASIC28.06■■■□□ 2.08
COL5A3P25940 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC28.06■■■□□ 2.08
COL5A3P25940 AC104187.1-201ENST00000607510 612 ntBASIC28.06■■■□□ 2.08
COL5A3P25940 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL5A3P25940 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC28.06■■■□□ 2.08
COL5A3P25940 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL5A3P25940 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC28.06■■■□□ 2.08
COL5A3P25940 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL5A3P25940 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL5A3P25940 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC28.05■■■□□ 2.08
COL5A3P25940 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
COL5A3P25940 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC28.05■■■□□ 2.08
COL5A3P25940 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.05■■■□□ 2.08
COL5A3P25940 MAZ-216ENST00000616501 991 ntTSL 5 BASIC28.05■■■□□ 2.08
COL5A3P25940 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC28.04■■■□□ 2.08
COL5A3P25940 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL5A3P25940 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC28.04■■■□□ 2.08
COL5A3P25940 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC28.04■■■□□ 2.08
COL5A3P25940 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL5A3P25940 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL5A3P25940 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL5A3P25940 DUX4L16-201ENST00000555130 1264 ntBASIC28.04■■■□□ 2.08
COL5A3P25940 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL5A3P25940 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC28.03■■■□□ 2.08
COL5A3P25940 H19-210ENST00000439725 1929 ntTSL 2 BASIC28.03■■■□□ 2.08
COL5A3P25940 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL5A3P25940 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC28.03■■■□□ 2.08
COL5A3P25940 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL5A3P25940 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC28.03■■■□□ 2.08
COL5A3P25940 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL5A3P25940 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL5A3P25940 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.02■■■□□ 2.08
COL5A3P25940 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL5A3P25940 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.02■■■□□ 2.08
COL5A3P25940 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC28.02■■■□□ 2.08
COL5A3P25940 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC28.02■■■□□ 2.08
COL5A3P25940 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC28.02■■■□□ 2.08
COL5A3P25940 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.01■■■□□ 2.07
COL5A3P25940 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC28.01■■■□□ 2.07
COL5A3P25940 ESRRAP2-201ENST00000418437 1549 ntBASIC28.01■■■□□ 2.07
COL5A3P25940 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL5A3P25940 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL5A3P25940 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
COL5A3P25940 GPX1P1-201ENST00000388829 606 ntBASIC28.01■■■□□ 2.07
COL5A3P25940 AC098934.4-201ENST00000564127 592 ntBASIC28.01■■■□□ 2.07
COL5A3P25940 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC28.01■■■□□ 2.07
COL5A3P25940 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL5A3P25940 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL5A3P25940 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
COL5A3P25940 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC28■■■□□ 2.07
COL5A3P25940 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL5A3P25940 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC28■■■□□ 2.07
COL5A3P25940 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC28■■■□□ 2.07
COL5A3P25940 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL5A3P25940 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
COL5A3P25940 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL5A3P25940 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC28■■■□□ 2.07
COL5A3P25940 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC28■■■□□ 2.07
COL5A3P25940 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
COL5A3P25940 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL5A3P25940 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC27.99■■■□□ 2.07
COL5A3P25940 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL5A3P25940 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL5A3P25940 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL5A3P25940 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC27.98■■■□□ 2.07
COL5A3P25940 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL5A3P25940 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC27.98■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms