Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 AC021242.3-201ENST00000607598 1377 ntBASIC20.78■□□□□ 0.92
VAPAQ9P0L0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 AL031848.2-201ENST00000607670 837 ntBASIC20.78■□□□□ 0.92
VAPAQ9P0L0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 AC010542.4-201ENST00000563151 1910 ntBASIC20.78■□□□□ 0.92
VAPAQ9P0L0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.78■□□□□ 0.92
VAPAQ9P0L0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 AC026310.3-201ENST00000625186 2373 ntBASIC20.77■□□□□ 0.92
VAPAQ9P0L0 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.77■□□□□ 0.92
VAPAQ9P0L0 DUX4L4-201ENST00000566884 1269 ntBASIC20.77■□□□□ 0.92
VAPAQ9P0L0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.77■□□□□ 0.91
VAPAQ9P0L0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VAPAQ9P0L0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VAPAQ9P0L0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 AC009086.3-201ENST00000623486 1008 ntBASIC20.76■□□□□ 0.91
VAPAQ9P0L0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 FAM99A-202ENST00000538190 1989 ntBASIC20.76■□□□□ 0.91
VAPAQ9P0L0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VAPAQ9P0L0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VAPAQ9P0L0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.74■□□□□ 0.91
VAPAQ9P0L0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.73■□□□□ 0.91
VAPAQ9P0L0 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VAPAQ9P0L0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.72■□□□□ 0.91
VAPAQ9P0L0 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms