Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.11
TM9SF3Q9HD45 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 AC004911.1-201ENST00000416316 871 ntBASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.01■■□□□ 1.11
TM9SF3Q9HD45 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
TM9SF3Q9HD45 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC22■■□□□ 1.11
TM9SF3Q9HD45 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
TM9SF3Q9HD45 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22■■□□□ 1.11
TM9SF3Q9HD45 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22■■□□□ 1.11
TM9SF3Q9HD45 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TM9SF3Q9HD45 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.99■■□□□ 1.11
TM9SF3Q9HD45 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 AC105233.4-201ENST00000642045 216 ntBASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TM9SF3Q9HD45 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 AC068473.5-201ENST00000616428 2072 ntBASIC21.97■■□□□ 1.11
TM9SF3Q9HD45 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TM9SF3Q9HD45 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TM9SF3Q9HD45 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms