Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.09■■□□□ 1.45
TRAIPQ9BWF2 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
TRAIPQ9BWF2 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.09■■□□□ 1.45
TRAIPQ9BWF2 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
TRAIPQ9BWF2 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.08■■□□□ 1.44
TRAIPQ9BWF2 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
TRAIPQ9BWF2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.08■■□□□ 1.44
TRAIPQ9BWF2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L2-201ENST00000561772 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L6-201ENST00000626483 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L1-201ENST00000627662 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L8-201ENST00000629013 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L3-201ENST00000630187 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L7-201ENST00000630678 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 DUX4L5-201ENST00000630834 1275 ntBASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TRAIPQ9BWF2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC24.06■■□□□ 1.44
TRAIPQ9BWF2 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 MIR6084-201ENST00000622012 110 ntBASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC24.05■■□□□ 1.44
TRAIPQ9BWF2 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 KRT18P5-201ENST00000436075 1291 ntBASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 AC068587.7-201ENST00000641602 218 ntBASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TRAIPQ9BWF2 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 AC068473.5-201ENST00000616428 2072 ntBASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 TERF1P2-201ENST00000583350 1212 ntBASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TRAIPQ9BWF2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 AL353803.4-201ENST00000565882 1934 ntBASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC24.02■■□□□ 1.44
TRAIPQ9BWF2 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms