Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AC027612.3-201ENST00000413684 1047 ntBASIC34.67■■■■□ 3.14
VPS8Q8N3P4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC34.67■■■■□ 3.14
VPS8Q8N3P4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC34.67■■■■□ 3.14
VPS8Q8N3P4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
VPS8Q8N3P4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC34.67■■■■□ 3.14
VPS8Q8N3P4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC34.67■■■■□ 3.14
VPS8Q8N3P4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC34.66■■■■□ 3.14
VPS8Q8N3P4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC34.66■■■■□ 3.14
VPS8Q8N3P4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
VPS8Q8N3P4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
VPS8Q8N3P4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC34.66■■■■□ 3.14
VPS8Q8N3P4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
VPS8Q8N3P4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC34.65■■■■□ 3.14
VPS8Q8N3P4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 LINC01960-201ENST00000563759 1884 ntBASIC34.64■■■■□ 3.14
VPS8Q8N3P4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC34.64■■■■□ 3.14
VPS8Q8N3P4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
VPS8Q8N3P4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
VPS8Q8N3P4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC34.63■■■■□ 3.13
VPS8Q8N3P4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
VPS8Q8N3P4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
VPS8Q8N3P4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC34.62■■■■□ 3.13
VPS8Q8N3P4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC34.62■■■■□ 3.13
VPS8Q8N3P4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
VPS8Q8N3P4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
VPS8Q8N3P4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC34.62■■■■□ 3.13
VPS8Q8N3P4 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC34.61■■■■□ 3.13
VPS8Q8N3P4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 AC010141.3-201ENST00000456659 717 ntBASIC34.6■■■■□ 3.13
VPS8Q8N3P4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC34.6■■■■□ 3.13
VPS8Q8N3P4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 SP2-202ENST00000613139 908 ntTSL 5 BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 MIR6821-201ENST00000617625 74 ntBASIC34.59■■■■□ 3.13
VPS8Q8N3P4 AL358852.1-201ENST00000623174 1268 ntBASIC34.59■■■■□ 3.13
VPS8Q8N3P4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC34.59■■■■□ 3.13
VPS8Q8N3P4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 AK1-201ENST00000223836 736 ntTSL 3 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 AC097381.1-201ENST00000429019 1296 ntBASIC34.58■■■■□ 3.13
VPS8Q8N3P4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 AL354811.1-201ENST00000610286 706 ntBASIC34.58■■■■□ 3.13
VPS8Q8N3P4 MIR6084-201ENST00000622012 110 ntBASIC34.58■■■■□ 3.13
VPS8Q8N3P4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
VPS8Q8N3P4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC34.57■■■■□ 3.13
VPS8Q8N3P4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC34.57■■■■□ 3.13
VPS8Q8N3P4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC34.57■■■■□ 3.13
VPS8Q8N3P4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC34.57■■■■□ 3.13
VPS8Q8N3P4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC34.57■■■■□ 3.12
VPS8Q8N3P4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC34.57■■■■□ 3.12
VPS8Q8N3P4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC34.57■■■■□ 3.12
VPS8Q8N3P4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC34.57■■■■□ 3.12
VPS8Q8N3P4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC34.56■■■■□ 3.12
VPS8Q8N3P4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
VPS8Q8N3P4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC34.56■■■■□ 3.12
VPS8Q8N3P4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
VPS8Q8N3P4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC34.56■■■■□ 3.12
VPS8Q8N3P4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC34.56■■■■□ 3.12
VPS8Q8N3P4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms