Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.94■□□□□ 0.94
RAE1P78406 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RAE1P78406 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
RAE1P78406 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 AL512631.2-201ENST00000604634 923 ntBASIC20.94■□□□□ 0.94
RAE1P78406 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
RAE1P78406 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.94■□□□□ 0.94
RAE1P78406 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 AL356441.2-201ENST00000443009 864 ntBASIC20.93■□□□□ 0.94
RAE1P78406 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.93■□□□□ 0.94
RAE1P78406 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.93■□□□□ 0.94
RAE1P78406 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RAE1P78406 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RAE1P78406 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
RAE1P78406 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RAE1P78406 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.92■□□□□ 0.94
RAE1P78406 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.92■□□□□ 0.94
RAE1P78406 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.92■□□□□ 0.94
RAE1P78406 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.92■□□□□ 0.94
RAE1P78406 AC099791.2-201ENST00000605725 427 ntBASIC20.92■□□□□ 0.94
RAE1P78406 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.92■□□□□ 0.94
RAE1P78406 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.92■□□□□ 0.94
RAE1P78406 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RAE1P78406 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.92■□□□□ 0.94
RAE1P78406 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAE1P78406 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
RAE1P78406 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RAE1P78406 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RAE1P78406 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RAE1P78406 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RAE1P78406 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RAE1P78406 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RAE1P78406 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.91■□□□□ 0.94
RAE1P78406 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RAE1P78406 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.91■□□□□ 0.94
RAE1P78406 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.91■□□□□ 0.94
RAE1P78406 AC137767.1-201ENST00000602918 1920 ntBASIC20.91■□□□□ 0.94
RAE1P78406 AC092053.2-201ENST00000640557 1818 ntBASIC20.91■□□□□ 0.94
RAE1P78406 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.9■□□□□ 0.94
RAE1P78406 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RAE1P78406 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.9■□□□□ 0.94
RAE1P78406 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RAE1P78406 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAE1P78406 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
RAE1P78406 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.89■□□□□ 0.94
RAE1P78406 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RAE1P78406 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RAE1P78406 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RAE1P78406 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.89■□□□□ 0.93
RAE1P78406 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RAE1P78406 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RAE1P78406 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RAE1P78406 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RAE1P78406 pRNA.6-201ENST00000610482 90 ntBASIC20.89■□□□□ 0.93
RAE1P78406 pRNA.5-201ENST00000612139 90 ntBASIC20.89■□□□□ 0.93
RAE1P78406 pRNA.11-201ENST00000618423 90 ntBASIC20.89■□□□□ 0.93
RAE1P78406 pRNA.13-201ENST00000619112 90 ntBASIC20.89■□□□□ 0.93
RAE1P78406 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
RAE1P78406 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RAE1P78406 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RAE1P78406 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 CA15P2-201ENST00000611168 834 ntBASIC20.88■□□□□ 0.93
RAE1P78406 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RAE1P78406 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms