Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
CIITAP33076 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CIITAP33076 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CIITAP33076 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.88■■□□□ 1.57
CIITAP33076 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
CIITAP33076 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CIITAP33076 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.88■■□□□ 1.57
CIITAP33076 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.88■■□□□ 1.57
CIITAP33076 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.88■■□□□ 1.57
CIITAP33076 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
CIITAP33076 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.88■■□□□ 1.57
CIITAP33076 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CIITAP33076 TSPY26P-201ENST00000476365 1326 ntBASIC24.87■■□□□ 1.57
CIITAP33076 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CIITAP33076 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CIITAP33076 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
CIITAP33076 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.87■■□□□ 1.57
CIITAP33076 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CIITAP33076 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.87■■□□□ 1.57
CIITAP33076 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
CIITAP33076 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
CIITAP33076 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CIITAP33076 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.86■■□□□ 1.57
CIITAP33076 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
CIITAP33076 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CIITAP33076 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.86■■□□□ 1.57
CIITAP33076 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.86■■□□□ 1.57
CIITAP33076 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.86■■□□□ 1.57
CIITAP33076 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
CIITAP33076 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CIITAP33076 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.86■■□□□ 1.57
CIITAP33076 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CIITAP33076 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.86■■□□□ 1.57
CIITAP33076 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.85■■□□□ 1.57
CIITAP33076 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CIITAP33076 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CIITAP33076 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.85■■□□□ 1.57
CIITAP33076 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CIITAP33076 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CIITAP33076 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CIITAP33076 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
CIITAP33076 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.84■■□□□ 1.57
CIITAP33076 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.84■■□□□ 1.57
CIITAP33076 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CIITAP33076 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CIITAP33076 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CIITAP33076 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CIITAP33076 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.83■■□□□ 1.57
CIITAP33076 IRS3P-201ENST00000223076 1006 ntBASIC24.83■■□□□ 1.57
CIITAP33076 MIR572-201ENST00000384983 95 ntBASIC24.83■■□□□ 1.57
CIITAP33076 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.83■■□□□ 1.57
CIITAP33076 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.83■■□□□ 1.57
CIITAP33076 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.83■■□□□ 1.56
CIITAP33076 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.83■■□□□ 1.56
CIITAP33076 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
CIITAP33076 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CIITAP33076 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
CIITAP33076 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.82■■□□□ 1.56
CIITAP33076 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CIITAP33076 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CIITAP33076 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CIITAP33076 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CIITAP33076 AC010141.3-201ENST00000456659 717 ntBASIC24.82■■□□□ 1.56
CIITAP33076 LINC01960-201ENST00000563759 1884 ntBASIC24.82■■□□□ 1.56
CIITAP33076 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.82■■□□□ 1.56
CIITAP33076 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.82■■□□□ 1.56
CIITAP33076 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.82■■□□□ 1.56
CIITAP33076 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CIITAP33076 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CIITAP33076 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC24.81■■□□□ 1.56
CIITAP33076 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.81■■□□□ 1.56
CIITAP33076 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CIITAP33076 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CIITAP33076 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
CIITAP33076 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
CIITAP33076 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
CIITAP33076 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
CIITAP33076 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC24.8■■□□□ 1.56
CIITAP33076 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CIITAP33076 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CIITAP33076 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.8■■□□□ 1.56
CIITAP33076 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.8■■□□□ 1.56
CIITAP33076 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.8■■□□□ 1.56
CIITAP33076 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.8■■□□□ 1.56
CIITAP33076 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
CIITAP33076 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CIITAP33076 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
CIITAP33076 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
CIITAP33076 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.79■■□□□ 1.56
CIITAP33076 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CIITAP33076 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC24.79■■□□□ 1.56
CIITAP33076 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.79■■□□□ 1.56
CIITAP33076 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms