Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC29.36■■■□□ 2.29
COL3A1P02461 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC29.36■■■□□ 2.29
COL3A1P02461 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL3A1P02461 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC29.36■■■□□ 2.29
COL3A1P02461 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC29.36■■■□□ 2.29
COL3A1P02461 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL3A1P02461 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
COL3A1P02461 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL3A1P02461 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC29.35■■■□□ 2.29
COL3A1P02461 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL3A1P02461 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
COL3A1P02461 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC29.34■■■□□ 2.29
COL3A1P02461 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC29.34■■■□□ 2.29
COL3A1P02461 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL3A1P02461 MIR6821-201ENST00000617625 74 ntBASIC29.34■■■□□ 2.29
COL3A1P02461 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
COL3A1P02461 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL3A1P02461 AC097381.1-201ENST00000429019 1296 ntBASIC29.33■■■□□ 2.29
COL3A1P02461 SP2-202ENST00000613139 908 ntTSL 5 BASIC29.33■■■□□ 2.29
COL3A1P02461 MIR6084-201ENST00000622012 110 ntBASIC29.33■■■□□ 2.29
COL3A1P02461 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL3A1P02461 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC29.33■■■□□ 2.29
COL3A1P02461 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL3A1P02461 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC29.32■■■□□ 2.28
COL3A1P02461 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL3A1P02461 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC29.32■■■□□ 2.28
COL3A1P02461 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC29.31■■■□□ 2.28
COL3A1P02461 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC29.31■■■□□ 2.28
COL3A1P02461 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC29.31■■■□□ 2.28
COL3A1P02461 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 AC087623.3-201ENST00000607047 1098 ntBASIC29.31■■■□□ 2.28
COL3A1P02461 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC29.31■■■□□ 2.28
COL3A1P02461 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 DUSP8P5-201ENST00000422884 1815 ntBASIC29.31■■■□□ 2.28
COL3A1P02461 GCA-201ENST00000233612 1694 ntTSL 2 BASIC29.31■■■□□ 2.28
COL3A1P02461 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL3A1P02461 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL3A1P02461 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC29.3■■■□□ 2.28
COL3A1P02461 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC29.3■■■□□ 2.28
COL3A1P02461 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC29.3■■■□□ 2.28
COL3A1P02461 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL3A1P02461 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC29.3■■■□□ 2.28
COL3A1P02461 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL3A1P02461 LINC01960-201ENST00000563759 1884 ntBASIC29.3■■■□□ 2.28
COL3A1P02461 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
COL3A1P02461 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC29.3■■■□□ 2.28
COL3A1P02461 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL3A1P02461 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC29.3■■■□□ 2.28
COL3A1P02461 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL3A1P02461 PLD4-205ENST00000553861 667 ntTSL 2 BASIC29.29■■■□□ 2.28
COL3A1P02461 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
COL3A1P02461 AC068587.7-201ENST00000641602 218 ntBASIC29.29■■■□□ 2.28
COL3A1P02461 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC29.29■■■□□ 2.28
COL3A1P02461 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC29.29■■■□□ 2.28
COL3A1P02461 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC29.29■■■□□ 2.28
COL3A1P02461 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL3A1P02461 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL3A1P02461 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL3A1P02461 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC29.29■■■□□ 2.28
COL3A1P02461 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC29.29■■■□□ 2.28
COL3A1P02461 LHPP-203ENST00000392757 840 ntTSL 3 BASIC29.29■■■□□ 2.28
COL3A1P02461 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL3A1P02461 AL358852.1-201ENST00000623174 1268 ntBASIC29.29■■■□□ 2.28
COL3A1P02461 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
COL3A1P02461 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
COL3A1P02461 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.28■■■□□ 2.28
COL3A1P02461 HACD1-201ENST00000326961 773 ntTSL 2 BASIC29.28■■■□□ 2.28
COL3A1P02461 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC29.28■■■□□ 2.28
COL3A1P02461 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL3A1P02461 YBX1P1-201ENST00000445822 960 ntBASIC29.28■■■□□ 2.28
COL3A1P02461 AL354811.1-201ENST00000610286 706 ntBASIC29.28■■■□□ 2.28
COL3A1P02461 RARA-203ENST00000394086 2008 ntTSL 2 BASIC29.28■■■□□ 2.28
COL3A1P02461 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC29.27■■■□□ 2.28
COL3A1P02461 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
COL3A1P02461 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC29.27■■■□□ 2.28
COL3A1P02461 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC29.27■■■□□ 2.28
COL3A1P02461 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC29.27■■■□□ 2.28
COL3A1P02461 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC29.27■■■□□ 2.28
COL3A1P02461 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC29.27■■■□□ 2.28
COL3A1P02461 TPRG1LP1-201ENST00000598702 760 ntBASIC29.27■■■□□ 2.28
COL3A1P02461 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC29.27■■■□□ 2.28
COL3A1P02461 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC29.27■■■□□ 2.28
COL3A1P02461 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC29.26■■■□□ 2.28
COL3A1P02461 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL3A1P02461 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL3A1P02461 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL3A1P02461 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL3A1P02461 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
COL3A1P02461 AC010141.3-201ENST00000456659 717 ntBASIC29.26■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms