Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
CUX2O14529 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC38.29■■■■□ 3.72
CUX2O14529 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC38.29■■■■□ 3.72
CUX2O14529 CPT2-209ENST00000636935 803 ntTSL 5 BASIC38.28■■■■□ 3.72
CUX2O14529 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC38.28■■■■□ 3.72
CUX2O14529 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC38.28■■■■□ 3.72
CUX2O14529 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC38.28■■■■□ 3.72
CUX2O14529 PPP1R14BP2-201ENST00000426284 444 ntBASIC38.28■■■■□ 3.72
CUX2O14529 APTR-203ENST00000430801 583 ntTSL 5 BASIC38.28■■■■□ 3.72
CUX2O14529 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC38.28■■■■□ 3.72
CUX2O14529 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC38.27■■■■□ 3.72
CUX2O14529 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
CUX2O14529 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC38.27■■■■□ 3.72
CUX2O14529 GXYLT1P3-201ENST00000453058 1193 ntBASIC38.27■■■■□ 3.72
CUX2O14529 MMD2-204ENST00000612910 778 ntTSL 5 BASIC38.27■■■■□ 3.72
CUX2O14529 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC38.27■■■■□ 3.72
CUX2O14529 AC092803.2-201ENST00000564287 1899 ntBASIC38.27■■■■□ 3.72
CUX2O14529 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC38.26■■■■□ 3.72
CUX2O14529 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC38.26■■■■□ 3.72
CUX2O14529 USF2-207ENST00000595068 1612 ntTSL 5 BASIC38.26■■■■□ 3.72
CUX2O14529 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC38.26■■■■□ 3.72
CUX2O14529 UBE2DNL-204ENST00000602536 740 ntBASIC38.26■■■■□ 3.72
CUX2O14529 LINC01023-201ENST00000606054 436 ntBASIC38.26■■■■□ 3.72
CUX2O14529 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC38.26■■■■□ 3.71
CUX2O14529 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC38.26■■■■□ 3.71
CUX2O14529 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
CUX2O14529 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC38.25■■■■□ 3.71
CUX2O14529 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC38.25■■■■□ 3.71
CUX2O14529 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
CUX2O14529 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC38.25■■■■□ 3.71
CUX2O14529 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC38.25■■■■□ 3.71
CUX2O14529 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
CUX2O14529 SLC6A10P-202ENST00000431994 2058 ntBASIC38.24■■■■□ 3.71
CUX2O14529 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC38.24■■■■□ 3.71
CUX2O14529 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
CUX2O14529 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC38.24■■■■□ 3.71
CUX2O14529 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC38.24■■■■□ 3.71
CUX2O14529 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC38.24■■■■□ 3.71
CUX2O14529 AC006058.3-201ENST00000606217 1069 ntBASIC38.23■■■■□ 3.71
CUX2O14529 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC38.23■■■■□ 3.71
CUX2O14529 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC38.23■■■■□ 3.71
CUX2O14529 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC38.23■■■■□ 3.71
CUX2O14529 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC38.22■■■■□ 3.71
CUX2O14529 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC38.22■■■■□ 3.71
CUX2O14529 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC38.22■■■■□ 3.71
CUX2O14529 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC38.22■■■■□ 3.71
CUX2O14529 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
CUX2O14529 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
CUX2O14529 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
CUX2O14529 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
CUX2O14529 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC38.22■■■■□ 3.71
CUX2O14529 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC38.22■■■■□ 3.71
CUX2O14529 AC128676.1-201ENST00000454392 318 ntBASIC38.22■■■■□ 3.71
CUX2O14529 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC38.22■■■■□ 3.71
CUX2O14529 MARS-234ENST00000630571 216 ntTSL 5 BASIC38.22■■■■□ 3.71
CUX2O14529 MARS-235ENST00000630803 183 ntTSL 3 BASIC38.22■■■■□ 3.71
CUX2O14529 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC38.21■■■■□ 3.71
CUX2O14529 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC38.21■■■■□ 3.71
CUX2O14529 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
CUX2O14529 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC38.21■■■■□ 3.71
CUX2O14529 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC38.21■■■■□ 3.71
CUX2O14529 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
CUX2O14529 PARP1-202ENST00000366792 553 ntTSL 3 BASIC38.21■■■■□ 3.71
CUX2O14529 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC38.21■■■■□ 3.71
CUX2O14529 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC38.21■■■■□ 3.71
CUX2O14529 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.71
CUX2O14529 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC38.2■■■■□ 3.71
CUX2O14529 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC38.2■■■■□ 3.71
CUX2O14529 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC38.2■■■■□ 3.71
CUX2O14529 AC211429.1-201ENST00000415277 523 ntBASIC38.2■■■■□ 3.71
CUX2O14529 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC38.2■■■■□ 3.71
CUX2O14529 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC38.19■■■■□ 3.7
CUX2O14529 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC38.19■■■■□ 3.7
CUX2O14529 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC38.19■■■■□ 3.7
CUX2O14529 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC38.19■■■■□ 3.7
CUX2O14529 AC083880.1-201ENST00000608266 535 ntBASIC38.19■■■■□ 3.7
CUX2O14529 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC38.19■■■■□ 3.7
CUX2O14529 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC38.19■■■■□ 3.7
CUX2O14529 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
CUX2O14529 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC38.19■■■■□ 3.7
CUX2O14529 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC38.18■■■■□ 3.7
CUX2O14529 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC38.18■■■■□ 3.7
CUX2O14529 AC079140.4-201ENST00000507448 529 ntBASIC38.18■■■■□ 3.7
CUX2O14529 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC38.18■■■■□ 3.7
CUX2O14529 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC38.18■■■■□ 3.7
CUX2O14529 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CUX2O14529 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC38.17■■■■□ 3.7
CUX2O14529 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC38.17■■■■□ 3.7
CUX2O14529 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CUX2O14529 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC38.17■■■■□ 3.7
CUX2O14529 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
CUX2O14529 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC38.16■■■■□ 3.7
CUX2O14529 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC38.16■■■■□ 3.7
CUX2O14529 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC38.16■■■■□ 3.7
CUX2O14529 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC38.16■■■■□ 3.7
CUX2O14529 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
CUX2O14529 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC38.16■■■■□ 3.7
CUX2O14529 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC38.16■■■■□ 3.7
CUX2O14529 CD37-213ENST00000598095 1598 ntTSL 2 BASIC38.16■■■■□ 3.7
CUX2O14529 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms