Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 AC009086.3-201ENST00000623486 1008 ntBASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.09■■□□□ 1.29
PCDHA3Q9Y5H8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 AC009102.2-201ENST00000606772 1639 ntBASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHA3Q9Y5H8 AC007375.3-201ENST00000600936 2314 ntBASIC23.08■■□□□ 1.28
PCDHA3Q9Y5H8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PCDHA3Q9Y5H8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 KRT125P-201ENST00000546827 989 ntBASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHA3Q9Y5H8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.06■■□□□ 1.28
PCDHA3Q9Y5H8 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 LINC01960-201ENST00000563759 1884 ntBASIC23.05■■□□□ 1.28
PCDHA3Q9Y5H8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 MIR4787-201ENST00000607364 84 ntBASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.04■■□□□ 1.28
PCDHA3Q9Y5H8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 MTDHP2-201ENST00000601468 714 ntBASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PCDHA3Q9Y5H8 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.02■■□□□ 1.28
PCDHA3Q9Y5H8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
PCDHA3Q9Y5H8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms