Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 KRT87P-202ENST00000534226 1464 ntBASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 AL596275.1-201ENST00000423464 877 ntBASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 UQCRFS1P1-201ENST00000435169 820 ntBASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ALMS1Q8TCU4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 SLC29A4P1-201ENST00000398760 971 ntBASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 GCSHP5-201ENST00000443090 522 ntBASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 TSPY6P-201ENST00000448518 926 ntBASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
ALMS1Q8TCU4 ALDH1A3-203ENST00000557963 1670 ntBASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC15.11■□□□□ 0.01
ALMS1Q8TCU4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 MARS-234ENST00000630571 216 ntTSL 5 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 MARS-235ENST00000630803 183 ntTSL 3 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 TESC-206ENST00000541210 936 ntTSL 3 BASIC15.1■□□□□ 0.01
ALMS1Q8TCU4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 AC083906.2-201ENST00000511578 360 ntBASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ALMS1Q8TCU4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
ALMS1Q8TCU4 AC092803.2-201ENST00000564287 1899 ntBASIC15.08■□□□□ 0.01
ALMS1Q8TCU4 POU5F1P3-201ENST00000428824 1078 ntBASIC15.08■□□□□ 0.01
ALMS1Q8TCU4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.08■□□□□ 0.01
ALMS1Q8TCU4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
ALMS1Q8TCU4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
ALMS1Q8TCU4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ALMS1Q8TCU4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
ALMS1Q8TCU4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms