Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 MIR572-201ENST00000384983 95 ntBASIC6.74□□□□□ -1.33
SYNE1Q8NF91 MAP2K4P1-201ENST00000438453 1195 ntBASIC6.74□□□□□ -1.33
SYNE1Q8NF91 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 TK2-208ENST00000545043 1120 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 AC012414.1-201ENST00000556676 535 ntBASIC6.74□□□□□ -1.33
SYNE1Q8NF91 KRT18P61-201ENST00000585825 1298 ntBASIC6.74□□□□□ -1.33
SYNE1Q8NF91 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SYNE1Q8NF91 AC006015.1-201ENST00000429970 570 ntBASIC6.73□□□□□ -1.33
SYNE1Q8NF91 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 C9orf163-202ENST00000624034 2573 ntBASIC6.73□□□□□ -1.33
SYNE1Q8NF91 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SYNE1Q8NF91 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 EI24-213ENST00000618552 1747 ntTSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ABCB10P4-201ENST00000566803 2184 ntBASIC6.72□□□□□ -1.33
SYNE1Q8NF91 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 AC144652.1-201ENST00000609974 1624 ntBASIC6.72□□□□□ -1.33
SYNE1Q8NF91 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 GUSBP6-202ENST00000438529 1198 ntBASIC6.72□□□□□ -1.33
SYNE1Q8NF91 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 MIR6084-201ENST00000622012 110 ntBASIC6.72□□□□□ -1.33
SYNE1Q8NF91 EI24-204ENST00000527235 1625 ntTSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms