Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC027612.3-201ENST00000413684 1047 ntBASIC28.09■■■□□ 2.09
CACNA1FO60840 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
CACNA1FO60840 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC28.09■■■□□ 2.09
CACNA1FO60840 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CACNA1FO60840 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.08■■■□□ 2.09
CACNA1FO60840 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.08■■■□□ 2.09
CACNA1FO60840 MIR572-201ENST00000384983 95 ntBASIC28.08■■■□□ 2.09
CACNA1FO60840 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.08■■■□□ 2.09
CACNA1FO60840 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
CACNA1FO60840 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CACNA1FO60840 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CACNA1FO60840 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CACNA1FO60840 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CACNA1FO60840 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CACNA1FO60840 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC28.07■■■□□ 2.08
CACNA1FO60840 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
CACNA1FO60840 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CACNA1FO60840 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
CACNA1FO60840 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC28.06■■■□□ 2.08
CACNA1FO60840 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CACNA1FO60840 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CACNA1FO60840 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CACNA1FO60840 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.06■■■□□ 2.08
CACNA1FO60840 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.06■■■□□ 2.08
CACNA1FO60840 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC28.06■■■□□ 2.08
CACNA1FO60840 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC28.06■■■□□ 2.08
CACNA1FO60840 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CACNA1FO60840 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CACNA1FO60840 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CACNA1FO60840 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CACNA1FO60840 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC28.05■■■□□ 2.08
CACNA1FO60840 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.05■■■□□ 2.08
CACNA1FO60840 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.05■■■□□ 2.08
CACNA1FO60840 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.05■■■□□ 2.08
CACNA1FO60840 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.05■■■□□ 2.08
CACNA1FO60840 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC28.05■■■□□ 2.08
CACNA1FO60840 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CACNA1FO60840 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC28.05■■■□□ 2.08
CACNA1FO60840 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC28.05■■■□□ 2.08
CACNA1FO60840 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
CACNA1FO60840 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
CACNA1FO60840 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC28.04■■■□□ 2.08
CACNA1FO60840 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC28.04■■■□□ 2.08
CACNA1FO60840 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC28.04■■■□□ 2.08
CACNA1FO60840 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC28.04■■■□□ 2.08
CACNA1FO60840 GUK1-205ENST00000366722 850 ntTSL 3 BASIC28.04■■■□□ 2.08
CACNA1FO60840 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC28.04■■■□□ 2.08
CACNA1FO60840 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC28.04■■■□□ 2.08
CACNA1FO60840 TSPY26P-201ENST00000476365 1326 ntBASIC28.04■■■□□ 2.08
CACNA1FO60840 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1FO60840 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
CACNA1FO60840 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
CACNA1FO60840 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
CACNA1FO60840 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1FO60840 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1FO60840 RARRES2P6-201ENST00000567333 442 ntBASIC28.03■■■□□ 2.08
CACNA1FO60840 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC28.03■■■□□ 2.08
CACNA1FO60840 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1FO60840 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1FO60840 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1FO60840 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.02■■■□□ 2.08
CACNA1FO60840 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CACNA1FO60840 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
CACNA1FO60840 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CACNA1FO60840 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CACNA1FO60840 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CACNA1FO60840 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CACNA1FO60840 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.02■■■□□ 2.08
CACNA1FO60840 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.02■■■□□ 2.08
CACNA1FO60840 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC28.02■■■□□ 2.08
CACNA1FO60840 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC28.02■■■□□ 2.08
CACNA1FO60840 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC28.02■■■□□ 2.08
CACNA1FO60840 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC28.01■■■□□ 2.08
CACNA1FO60840 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.08
CACNA1FO60840 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
CACNA1FO60840 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC28.01■■■□□ 2.07
CACNA1FO60840 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
CACNA1FO60840 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC28■■■□□ 2.07
CACNA1FO60840 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28■■■□□ 2.07
CACNA1FO60840 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC28■■■□□ 2.07
CACNA1FO60840 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28■■■□□ 2.07
CACNA1FO60840 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
CACNA1FO60840 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CACNA1FO60840 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
CACNA1FO60840 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CACNA1FO60840 GRAMD4P2-201ENST00000423297 1097 ntBASIC27.99■■■□□ 2.07
CACNA1FO60840 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CACNA1FO60840 EI24-211ENST00000534546 1544 ntTSL 2 BASIC27.99■■■□□ 2.07
CACNA1FO60840 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC27.99■■■□□ 2.07
CACNA1FO60840 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC27.99■■■□□ 2.07
CACNA1FO60840 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC27.99■■■□□ 2.07
CACNA1FO60840 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
CACNA1FO60840 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
CACNA1FO60840 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC27.98■■■□□ 2.07
CACNA1FO60840 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC27.98■■■□□ 2.07
CACNA1FO60840 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
CACNA1FO60840 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
CACNA1FO60840 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
CACNA1FO60840 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC27.97■■■□□ 2.07
CACNA1FO60840 IRS3P-201ENST00000223076 1006 ntBASIC27.97■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms