Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SPTY2D1-201ENST00000336349 5754 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 GRM4-202ENST00000374181 7275 ntTSL 5 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 CASC15-204ENST00000606197 3969 ntTSL 2 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 AC093462.1-201ENST00000621167 1683 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 RPL8P2-201ENST00000430538 502 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 XBP1P1-201ENST00000436573 652 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 RN7SL258P-201ENST00000478664 300 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 RCC2P8-201ENST00000502779 1035 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 AC104758.3-203ENST00000562938 2123 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 STUB1-204ENST00000564370 875 ntTSL 2 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 CEP68-201ENST00000260569 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 AP002353.1-201ENST00000528257 1599 ntBASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 WWP2-202ENST00000359154 4515 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 WDR47-201ENST00000357672 4144 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PDLIM3Q53GG5 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 AL031719.1-201ENST00000623365 2587 ntBASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 PBX1-203ENST00000420696 6636 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 FZD7-201ENST00000286201 3859 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
PDLIM3Q53GG5 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 GOLGA4-202ENST00000361924 7772 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 COX20P1-201ENST00000366529 357 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC023141.7-201ENST00000430646 407 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC026410.1-201ENST00000507366 1101 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 SKA2-205ENST00000580541 689 ntTSL 3 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AL356740.1-201ENST00000602192 1297 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AL627230.2-201ENST00000613254 655 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC073911.3-201ENST00000624401 631 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 PI4KAP2-201ENST00000360806 2080 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms