Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 BID-214ENST00000617586 542 ntTSL 5 BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC88AQ3V6T2 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 OR2I1P-207ENST00000453522 948 ntBASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 GAMT-205ENST00000640762 751 ntTSL 5 BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
CCDC88AQ3V6T2 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CCDC88AQ3V6T2 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC27.46■■□□□ 1.99
CCDC88AQ3V6T2 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC27.46■■□□□ 1.99
CCDC88AQ3V6T2 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC27.46■■□□□ 1.99
CCDC88AQ3V6T2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CCDC88AQ3V6T2 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.46■■□□□ 1.99
CCDC88AQ3V6T2 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
CCDC88AQ3V6T2 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
CCDC88AQ3V6T2 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
CCDC88AQ3V6T2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC27.44■■□□□ 1.98
CCDC88AQ3V6T2 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC88AQ3V6T2 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC88AQ3V6T2 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC88AQ3V6T2 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC88AQ3V6T2 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 AC142381.3-201ENST00000568208 1670 ntBASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CCDC88AQ3V6T2 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 AC004854.2-201ENST00000608450 1441 ntBASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC27.42■■□□□ 1.98
CCDC88AQ3V6T2 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
CCDC88AQ3V6T2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.41■■□□□ 1.98
CCDC88AQ3V6T2 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
CCDC88AQ3V6T2 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC27.41■■□□□ 1.98
CCDC88AQ3V6T2 COX20-201ENST00000366528 568 ntTSL 2 BASIC27.41■■□□□ 1.98
CCDC88AQ3V6T2 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 MIR4651-201ENST00000582622 73 ntBASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 AL499627.2-201ENST00000606283 725 ntBASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC27.4■■□□□ 1.98
CCDC88AQ3V6T2 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 EED-207ENST00000528180 1745 ntTSL 5 BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC88AQ3V6T2 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
CCDC88AQ3V6T2 ALDH1A3-203ENST00000557963 1670 ntBASIC27.39■■□□□ 1.97
CCDC88AQ3V6T2 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
CCDC88AQ3V6T2 LINC02228-203ENST00000641970 1355 ntBASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 AC105233.4-201ENST00000642045 216 ntBASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
CCDC88AQ3V6T2 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 AL050303.2-201ENST00000619798 666 ntBASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CCDC88AQ3V6T2 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC27.37■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms