Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL28A1Q2UY09 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL28A1Q2UY09 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL28A1Q2UY09 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL28A1Q2UY09 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.23■□□□□ 0.99
COL28A1Q2UY09 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL28A1Q2UY09 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.23■□□□□ 0.99
COL28A1Q2UY09 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 CROCCP5-201ENST00000436658 830 ntBASIC21.22■□□□□ 0.99
COL28A1Q2UY09 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL28A1Q2UY09 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL28A1Q2UY09 HLA-L-211ENST00000482052 1765 ntBASIC21.2■□□□□ 0.99
COL28A1Q2UY09 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 NCF1B-203ENST00000435988 1254 ntBASIC21.2■□□□□ 0.98
COL28A1Q2UY09 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.2■□□□□ 0.98
COL28A1Q2UY09 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL28A1Q2UY09 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 pRNA.6-201ENST00000610482 90 ntBASIC21.18■□□□□ 0.98
COL28A1Q2UY09 pRNA.5-201ENST00000612139 90 ntBASIC21.18■□□□□ 0.98
COL28A1Q2UY09 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.18■□□□□ 0.98
COL28A1Q2UY09 pRNA.11-201ENST00000618423 90 ntBASIC21.18■□□□□ 0.98
COL28A1Q2UY09 pRNA.13-201ENST00000619112 90 ntBASIC21.18■□□□□ 0.98
COL28A1Q2UY09 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.18■□□□□ 0.98
COL28A1Q2UY09 AL139125.2-201ENST00000623134 1869 ntBASIC21.18■□□□□ 0.98
COL28A1Q2UY09 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 BID-214ENST00000617586 542 ntTSL 5 BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms