Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC26.1■■□□□ 1.77
SHROOM1Q2M3G4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SHROOM1Q2M3G4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.08■■□□□ 1.77
SHROOM1Q2M3G4 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
SHROOM1Q2M3G4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SHROOM1Q2M3G4 AC004687.1-201ENST00000579003 1625 ntBASIC26.07■■□□□ 1.76
SHROOM1Q2M3G4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.07■■□□□ 1.76
SHROOM1Q2M3G4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC26.07■■□□□ 1.76
SHROOM1Q2M3G4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.07■■□□□ 1.76
SHROOM1Q2M3G4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
SHROOM1Q2M3G4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC26.06■■□□□ 1.76
SHROOM1Q2M3G4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC26.06■■□□□ 1.76
SHROOM1Q2M3G4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
SHROOM1Q2M3G4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
SHROOM1Q2M3G4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 AC123595.1-201ENST00000440769 1046 ntBASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 AL354811.1-201ENST00000610286 706 ntBASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SHROOM1Q2M3G4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 KRT18P61-201ENST00000585825 1298 ntBASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 AL353803.4-201ENST00000565882 1934 ntBASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SHROOM1Q2M3G4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 AP005435.1-201ENST00000529293 1178 ntBASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC26.03■■□□□ 1.76
SHROOM1Q2M3G4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 TERF1P2-201ENST00000583350 1212 ntBASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SHROOM1Q2M3G4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC26.01■■□□□ 1.75
SHROOM1Q2M3G4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 NT5C3AP1-201ENST00000394500 1012 ntBASIC26■■□□□ 1.75
SHROOM1Q2M3G4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 KRT18P14-201ENST00000534205 1250 ntBASIC26■■□□□ 1.75
SHROOM1Q2M3G4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 AC105233.4-201ENST00000642045 216 ntBASIC26■■□□□ 1.75
SHROOM1Q2M3G4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
SHROOM1Q2M3G4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
SHROOM1Q2M3G4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.99■■□□□ 1.75
SHROOM1Q2M3G4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms