Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SPATA31C1-202ENST00000602681 1927 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 PLP2-202ENST00000376327 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 AC061992.1-202ENST00000587575 490 ntTSL 3 BASIC13.3□□□□□ -0.28
COL6A3P12111 CNFN-202ENST00000597255 502 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 SCHIP1-201ENST00000445224 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 LILRA4-201ENST00000291759 1944 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 TSPEAR-AS2-201ENST00000330490 823 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 MIRLET7I-201ENST00000362309 84 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 AL591503.3-201ENST00000423038 635 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 AC021242.2-202ENST00000522129 545 ntTSL 4 BASIC13.3□□□□□ -0.28
COL6A3P12111 AC079779.3-201ENST00000588842 1200 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 CSH1-206ENST00000610991 580 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 SLC25A19-201ENST00000320362 1651 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 PMEL-215ENST00000550464 1867 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 GOLGA8Q-201ENST00000562783 1899 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 AC073263.2-201ENST00000624835 1863 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 PKD1P6-201ENST00000343738 4769 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 UTP4-202ENST00000352319 1841 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 PMS1-204ENST00000409823 2795 ntTSL 5 BASIC13.3□□□□□ -0.28
COL6A3P12111 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 AC026691.1-201ENST00000602502 2017 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 DNPEP-220ENST00000523282 1662 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 AL449266.1-201ENST00000357393 557 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
COL6A3P12111 C12orf71-201ENST00000429849 957 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 CSMD2-AS1-205ENST00000434181 655 ntTSL 3 BASIC13.3□□□□□ -0.28
COL6A3P12111 SPTLC1P4-201ENST00000435997 260 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 AL031597.1-201ENST00000447383 432 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 LINC01270-202ENST00000457853 943 ntTSL 3 BASIC13.3□□□□□ -0.28
COL6A3P12111 AC113340.1-201ENST00000475257 636 ntBASIC13.3□□□□□ -0.28
COL6A3P12111 PRR13-208ENST00000549740 786 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL6A3P12111 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 DEDD-203ENST00000458050 2300 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 HADHB-202ENST00000405867 1588 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
COL6A3P12111 GH1-201ENST00000323322 803 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 GH1-202ENST00000342364 537 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 TMEM254-202ENST00000372274 481 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 GH1-204ENST00000458650 756 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 AC126773.3-201ENST00000562089 893 ntBASIC13.29□□□□□ -0.28
COL6A3P12111 RN7SL220P-201ENST00000581978 300 ntBASIC13.29□□□□□ -0.28
COL6A3P12111 GH1-206ENST00000617086 376 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 BPIFA1-204ENST00000618484 907 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 LDAH-213ENST00000626491 1179 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 AC091885.2-201ENST00000510391 1791 ntTSL 3 BASIC13.29□□□□□ -0.28
COL6A3P12111 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 RAP1A-201ENST00000356415 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 DFNB59-202ENST00000409117 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 SPATA22-201ENST00000268981 1280 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 TSPAN16-201ENST00000316737 1040 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 SUN5-202ENST00000375519 513 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 ADH5P2-201ENST00000425922 1124 ntBASIC13.29□□□□□ -0.28
COL6A3P12111 AL139011.1-201ENST00000442130 557 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 RN7SL658P-201ENST00000463595 303 ntBASIC13.29□□□□□ -0.28
COL6A3P12111 SLC35A5-207ENST00000494706 840 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 AP001360.1-201ENST00000534055 518 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 AL662791.5-202ENST00000623946 461 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 ANXA13-202ENST00000419625 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 AC240565.1-201ENST00000624936 1373 ntTSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.29□□□□□ -0.28
COL6A3P12111 NAMA-207ENST00000605707 1748 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL6A3P12111 AC091807.1-201ENST00000418838 1544 ntBASIC13.29□□□□□ -0.28
COL6A3P12111 OR10N1P-203ENST00000641736 1305 ntBASIC13.29□□□□□ -0.28
COL6A3P12111 HEBP1-203ENST00000536942 2056 ntTSL 2 BASIC13.29□□□□□ -0.28
COL6A3P12111 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms