Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
RAE1P78406 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC12.78□□□□□ -0.36
RAE1P78406 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC12.78□□□□□ -0.36
RAE1P78406 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC12.78□□□□□ -0.36
RAE1P78406 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.78□□□□□ -0.36
RAE1P78406 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC12.78□□□□□ -0.36
RAE1P78406 AP001120.3-201ENST00000585729 489 ntBASIC12.78□□□□□ -0.36
RAE1P78406 RPL17P45-201ENST00000586289 509 ntBASIC12.78□□□□□ -0.36
RAE1P78406 MFSD12-215ENST00000615613 688 ntBASIC12.78□□□□□ -0.36
RAE1P78406 AC242376.2-201ENST00000619355 883 ntBASIC12.78□□□□□ -0.36
RAE1P78406 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC12.78□□□□□ -0.36
RAE1P78406 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RAE1P78406 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 AC012358.2-201ENST00000430010 1434 ntBASIC12.78□□□□□ -0.36
RAE1P78406 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RAE1P78406 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 AC022098.1-201ENST00000588387 2861 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RAE1P78406 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RAE1P78406 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 FPR2-203ENST00000598953 1544 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
RAE1P78406 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.77□□□□□ -0.36
RAE1P78406 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC12.77□□□□□ -0.36
RAE1P78406 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.36
RAE1P78406 C20orf96-203ENST00000400269 1608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.36
RAE1P78406 Z98259.1-201ENST00000564261 1697 ntBASIC12.77□□□□□ -0.36
RAE1P78406 C1QTNF3-202ENST00000382065 2802 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 C3orf56-201ENST00000624688 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RAE1P78406 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
RAE1P78406 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 AC008806.1-201ENST00000624962 2443 ntBASIC12.77□□□□□ -0.37
RAE1P78406 AL031666.1-201ENST00000413818 1809 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RAE1P78406 HIST2H2BA-201ENST00000412169 381 ntBASIC12.77□□□□□ -0.37
RAE1P78406 BCYRN1-201ENST00000418539 200 ntBASIC12.77□□□□□ -0.37
RAE1P78406 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC12.77□□□□□ -0.37
RAE1P78406 FGFR3P1-201ENST00000449999 601 ntBASIC12.77□□□□□ -0.37
RAE1P78406 DPY19L2P5-201ENST00000456300 331 ntBASIC12.77□□□□□ -0.37
RAE1P78406 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 SRP19-206ENST00000515463 660 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 FAM213AP2-201ENST00000521579 683 ntBASIC12.77□□□□□ -0.37
RAE1P78406 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.77□□□□□ -0.37
RAE1P78406 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RAE1P78406 ZDHHC8P1-202ENST00000418264 1403 ntBASIC12.77□□□□□ -0.37
RAE1P78406 ABLIM2-206ENST00000447017 2902 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 KRT8P19-201ENST00000551916 1455 ntBASIC12.77□□□□□ -0.37
RAE1P78406 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RAE1P78406 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 LNP1-201ENST00000383693 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RAE1P78406 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
RAE1P78406 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC12.77□□□□□ -0.37
RAE1P78406 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC12.77□□□□□ -0.37
RAE1P78406 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RAE1P78406 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC12.77□□□□□ -0.37
RAE1P78406 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
RAE1P78406 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RAE1P78406 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RAE1P78406 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
RAE1P78406 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RAE1P78406 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
RAE1P78406 PABPC1P2-201ENST00000471997 1805 ntBASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms