Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NT5C3AP1-201ENST00000394500 1012 ntBASIC30.16■■■□□ 2.42
USP54Q70EL1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
USP54Q70EL1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
USP54Q70EL1 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
USP54Q70EL1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC30.15■■■□□ 2.42
USP54Q70EL1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC30.15■■■□□ 2.42
USP54Q70EL1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
USP54Q70EL1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC30.15■■■□□ 2.42
USP54Q70EL1 AL137784.2-201ENST00000607332 1000 ntBASIC30.15■■■□□ 2.42
USP54Q70EL1 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
USP54Q70EL1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
USP54Q70EL1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
USP54Q70EL1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC30.14■■■□□ 2.42
USP54Q70EL1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC30.14■■■□□ 2.42
USP54Q70EL1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC30.14■■■□□ 2.42
USP54Q70EL1 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
USP54Q70EL1 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
USP54Q70EL1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
USP54Q70EL1 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
USP54Q70EL1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC30.14■■■□□ 2.41
USP54Q70EL1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
USP54Q70EL1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.13■■■□□ 2.41
USP54Q70EL1 AC079630.1-202ENST00000618127 1840 ntBASIC30.13■■■□□ 2.41
USP54Q70EL1 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
USP54Q70EL1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC30.12■■■□□ 2.41
USP54Q70EL1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
USP54Q70EL1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.11■■■□□ 2.41
USP54Q70EL1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC30.11■■■□□ 2.41
USP54Q70EL1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC30.11■■■□□ 2.41
USP54Q70EL1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
USP54Q70EL1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
USP54Q70EL1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.11■■■□□ 2.41
USP54Q70EL1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC30.11■■■□□ 2.41
USP54Q70EL1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
USP54Q70EL1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
USP54Q70EL1 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
USP54Q70EL1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
USP54Q70EL1 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC30.11■■■□□ 2.41
USP54Q70EL1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
USP54Q70EL1 AC135731.1-201ENST00000569415 2548 ntBASIC30.1■■■□□ 2.41
USP54Q70EL1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USP54Q70EL1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC30.1■■■□□ 2.41
USP54Q70EL1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USP54Q70EL1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC30.1■■■□□ 2.41
USP54Q70EL1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP54Q70EL1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
USP54Q70EL1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
USP54Q70EL1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC30.09■■■□□ 2.41
USP54Q70EL1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
USP54Q70EL1 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP54Q70EL1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
USP54Q70EL1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
USP54Q70EL1 LINC01529-204ENST00000636474 1715 ntBASIC30.08■■■□□ 2.41
USP54Q70EL1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
USP54Q70EL1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
USP54Q70EL1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.07■■■□□ 2.4
USP54Q70EL1 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
USP54Q70EL1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC30.07■■■□□ 2.4
USP54Q70EL1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC30.07■■■□□ 2.4
USP54Q70EL1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
USP54Q70EL1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC30.07■■■□□ 2.4
USP54Q70EL1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
USP54Q70EL1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
USP54Q70EL1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
USP54Q70EL1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
USP54Q70EL1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC30.06■■■□□ 2.4
USP54Q70EL1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC30.06■■■□□ 2.4
USP54Q70EL1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC30.06■■■□□ 2.4
USP54Q70EL1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC30.06■■■□□ 2.4
USP54Q70EL1 LINC00543-201ENST00000567234 1845 ntBASIC30.06■■■□□ 2.4
USP54Q70EL1 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.06■■■□□ 2.4
USP54Q70EL1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
USP54Q70EL1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC30.05■■■□□ 2.4
USP54Q70EL1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC30.05■■■□□ 2.4
USP54Q70EL1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC30.05■■■□□ 2.4
USP54Q70EL1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.05■■■□□ 2.4
USP54Q70EL1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC30.05■■■□□ 2.4
USP54Q70EL1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
USP54Q70EL1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
USP54Q70EL1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC30.04■■■□□ 2.4
USP54Q70EL1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC30.04■■■□□ 2.4
USP54Q70EL1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC30.04■■■□□ 2.4
USP54Q70EL1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC30.04■■■□□ 2.4
USP54Q70EL1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC30.04■■■□□ 2.4
USP54Q70EL1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP54Q70EL1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
USP54Q70EL1 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms