Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF404Q494X3 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF404Q494X3 RPS2P7-201ENST00000447334 885 ntBASIC20.06■□□□□ 0.8
ZNF404Q494X3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF404Q494X3 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.06■□□□□ 0.8
ZNF404Q494X3 BHLHE23-202ENST00000612929 1109 ntBASIC20.06■□□□□ 0.8
ZNF404Q494X3 AC074183.2-201ENST00000623112 922 ntBASIC20.06■□□□□ 0.8
ZNF404Q494X3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF404Q494X3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF404Q494X3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 AC087393.1-201ENST00000582896 145 ntBASIC20.05■□□□□ 0.8
ZNF404Q494X3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ZNF404Q494X3 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF404Q494X3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF404Q494X3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
ZNF404Q494X3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ZNF404Q494X3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ZNF404Q494X3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ZNF404Q494X3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 AC092053.2-201ENST00000640557 1818 ntBASIC20.04■□□□□ 0.8
ZNF404Q494X3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZNF404Q494X3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ZNF404Q494X3 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF404Q494X3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
ZNF404Q494X3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF404Q494X3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF404Q494X3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.02■□□□□ 0.8
ZNF404Q494X3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
ZNF404Q494X3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ZNF404Q494X3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
ZNF404Q494X3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
ZNF404Q494X3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.02■□□□□ 0.8
ZNF404Q494X3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF404Q494X3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF404Q494X3 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.02■□□□□ 0.79
ZNF404Q494X3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.01■□□□□ 0.79
ZNF404Q494X3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF404Q494X3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.01■□□□□ 0.79
ZNF404Q494X3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ZNF404Q494X3 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF404Q494X3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF404Q494X3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF404Q494X3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF404Q494X3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
ZNF404Q494X3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF404Q494X3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20■□□□□ 0.79
ZNF404Q494X3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20■□□□□ 0.79
ZNF404Q494X3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20■□□□□ 0.79
ZNF404Q494X3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF404Q494X3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
ZNF404Q494X3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
ZNF404Q494X3 AC026310.3-201ENST00000625186 2373 ntBASIC19.99■□□□□ 0.79
ZNF404Q494X3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.99■□□□□ 0.79
ZNF404Q494X3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.99■□□□□ 0.79
ZNF404Q494X3 AC010980.1-201ENST00000587192 1142 ntBASIC19.99■□□□□ 0.79
ZNF404Q494X3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF404Q494X3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
ZNF404Q494X3 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ZNF404Q494X3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
ZNF404Q494X3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF404Q494X3 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms