Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
VCPP55072 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VCPP55072 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VCPP55072 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.72■■□□□ 1.39
VCPP55072 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VCPP55072 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.71■■□□□ 1.39
VCPP55072 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
VCPP55072 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.71■■□□□ 1.39
VCPP55072 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
VCPP55072 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
VCPP55072 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.71■■□□□ 1.39
VCPP55072 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
VCPP55072 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.71■■□□□ 1.39
VCPP55072 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.71■■□□□ 1.39
VCPP55072 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VCPP55072 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
VCPP55072 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
VCPP55072 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.7■■□□□ 1.39
VCPP55072 AL022069.1-201ENST00000568025 1636 ntBASIC23.7■■□□□ 1.39
VCPP55072 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
VCPP55072 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VCPP55072 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.7■■□□□ 1.38
VCPP55072 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.7■■□□□ 1.38
VCPP55072 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.7■■□□□ 1.38
VCPP55072 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.7■■□□□ 1.38
VCPP55072 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.7■■□□□ 1.38
VCPP55072 AC092171.4-201ENST00000609130 632 ntBASIC23.7■■□□□ 1.38
VCPP55072 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.7■■□□□ 1.38
VCPP55072 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.7■■□□□ 1.38
VCPP55072 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.7■■□□□ 1.38
VCPP55072 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VCPP55072 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.7■■□□□ 1.38
VCPP55072 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
VCPP55072 ESRRAP2-201ENST00000418437 1549 ntBASIC23.69■■□□□ 1.38
VCPP55072 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.69■■□□□ 1.38
VCPP55072 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.69■■□□□ 1.38
VCPP55072 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.69■■□□□ 1.38
VCPP55072 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.69■■□□□ 1.38
VCPP55072 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VCPP55072 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
VCPP55072 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.68■■□□□ 1.38
VCPP55072 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.68■■□□□ 1.38
VCPP55072 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
VCPP55072 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.68■■□□□ 1.38
VCPP55072 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.68■■□□□ 1.38
VCPP55072 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
VCPP55072 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VCPP55072 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
VCPP55072 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
VCPP55072 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VCPP55072 AC005703.6-201ENST00000623265 1329 ntBASIC23.67■■□□□ 1.38
VCPP55072 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.67■■□□□ 1.38
VCPP55072 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
VCPP55072 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VCPP55072 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.67■■□□□ 1.38
VCPP55072 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.67■■□□□ 1.38
VCPP55072 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
VCPP55072 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.67■■□□□ 1.38
VCPP55072 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VCPP55072 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VCPP55072 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.66■■□□□ 1.38
VCPP55072 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.66■■□□□ 1.38
VCPP55072 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
VCPP55072 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
VCPP55072 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
VCPP55072 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.65■■□□□ 1.38
VCPP55072 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.65■■□□□ 1.38
VCPP55072 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.65■■□□□ 1.38
VCPP55072 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
VCPP55072 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
VCPP55072 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VCPP55072 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VCPP55072 HLA-L-209ENST00000420110 1011 ntBASIC23.65■■□□□ 1.38
VCPP55072 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.65■■□□□ 1.38
VCPP55072 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VCPP55072 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.65■■□□□ 1.38
VCPP55072 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms