Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.63■■□□□ 1.05
COL5A1P20908 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.63■■□□□ 1.05
COL5A1P20908 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A1P20908 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.63■■□□□ 1.05
COL5A1P20908 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A1P20908 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
COL5A1P20908 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A1P20908 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A1P20908 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.62■■□□□ 1.05
COL5A1P20908 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.62■■□□□ 1.05
COL5A1P20908 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL5A1P20908 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.62■■□□□ 1.05
COL5A1P20908 DUX4L4-201ENST00000566884 1269 ntBASIC21.62■■□□□ 1.05
COL5A1P20908 RAP2CP1-201ENST00000605103 478 ntBASIC21.62■■□□□ 1.05
COL5A1P20908 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.62■■□□□ 1.05
COL5A1P20908 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A1P20908 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL5A1P20908 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A1P20908 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A1P20908 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL5A1P20908 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A1P20908 KRT18P61-201ENST00000585825 1298 ntBASIC21.62■■□□□ 1.05
COL5A1P20908 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A1P20908 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.61■■□□□ 1.05
COL5A1P20908 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A1P20908 LINC02228-203ENST00000641970 1355 ntBASIC21.61■■□□□ 1.05
COL5A1P20908 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A1P20908 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A1P20908 AC016769.1-201ENST00000409132 1010 ntBASIC21.61■■□□□ 1.05
COL5A1P20908 HLA-L-209ENST00000420110 1011 ntBASIC21.61■■□□□ 1.05
COL5A1P20908 AC006015.1-201ENST00000429970 570 ntBASIC21.61■■□□□ 1.05
COL5A1P20908 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.61■■□□□ 1.05
COL5A1P20908 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.61■■□□□ 1.05
COL5A1P20908 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
COL5A1P20908 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
COL5A1P20908 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.6■■□□□ 1.05
COL5A1P20908 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL5A1P20908 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.6■■□□□ 1.05
COL5A1P20908 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
COL5A1P20908 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.6■■□□□ 1.05
COL5A1P20908 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A1P20908 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.59■■□□□ 1.05
COL5A1P20908 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A1P20908 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.59■■□□□ 1.05
COL5A1P20908 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
COL5A1P20908 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.59■■□□□ 1.05
COL5A1P20908 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A1P20908 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.59■■□□□ 1.05
COL5A1P20908 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A1P20908 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
COL5A1P20908 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A1P20908 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A1P20908 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A1P20908 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
COL5A1P20908 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
COL5A1P20908 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A1P20908 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A1P20908 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
COL5A1P20908 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.58■■□□□ 1.05
COL5A1P20908 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
COL5A1P20908 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.58■■□□□ 1.05
COL5A1P20908 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.58■■□□□ 1.04
COL5A1P20908 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL5A1P20908 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.58■■□□□ 1.04
COL5A1P20908 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
COL5A1P20908 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.57■■□□□ 1.04
COL5A1P20908 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.57■■□□□ 1.04
COL5A1P20908 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
COL5A1P20908 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.57■■□□□ 1.04
COL5A1P20908 AC105233.4-201ENST00000642045 216 ntBASIC21.57■■□□□ 1.04
COL5A1P20908 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A1P20908 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A1P20908 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A1P20908 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A1P20908 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A1P20908 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL5A1P20908 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.56■■□□□ 1.04
COL5A1P20908 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.56■■□□□ 1.04
COL5A1P20908 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
COL5A1P20908 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.56■■□□□ 1.04
COL5A1P20908 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
COL5A1P20908 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.56■■□□□ 1.04
COL5A1P20908 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.56■■□□□ 1.04
COL5A1P20908 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A1P20908 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms