Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RFX3P48380 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
RFX3P48380 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RFX3P48380 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
RFX3P48380 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.87■□□□□ 0.93
RFX3P48380 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.87■□□□□ 0.93
RFX3P48380 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 C9orf163-202ENST00000624034 2573 ntBASIC20.87■□□□□ 0.93
RFX3P48380 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RFX3P48380 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
RFX3P48380 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX3P48380 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.86■□□□□ 0.93
RFX3P48380 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX3P48380 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RFX3P48380 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX3P48380 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX3P48380 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX3P48380 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.85■□□□□ 0.93
RFX3P48380 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX3P48380 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RFX3P48380 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.85■□□□□ 0.93
RFX3P48380 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.85■□□□□ 0.93
RFX3P48380 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX3P48380 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.85■□□□□ 0.93
RFX3P48380 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.85■□□□□ 0.93
RFX3P48380 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.85■□□□□ 0.93
RFX3P48380 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
RFX3P48380 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX3P48380 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX3P48380 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX3P48380 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.84■□□□□ 0.93
RFX3P48380 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 MIR6724-1-201ENST00000616420 92 ntBASIC20.84■□□□□ 0.93
RFX3P48380 MIR6724-2-201ENST00000616483 92 ntBASIC20.84■□□□□ 0.93
RFX3P48380 MIR6724-4-201ENST00000617390 92 ntBASIC20.84■□□□□ 0.93
RFX3P48380 MIR6724-3-201ENST00000622482 92 ntBASIC20.84■□□□□ 0.93
RFX3P48380 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
RFX3P48380 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.84■□□□□ 0.93
RFX3P48380 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX3P48380 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RFX3P48380 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RFX3P48380 AC079630.1-202ENST00000618127 1840 ntBASIC20.83■□□□□ 0.93
RFX3P48380 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFX3P48380 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.83■□□□□ 0.93
RFX3P48380 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.83■□□□□ 0.93
RFX3P48380 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFX3P48380 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFX3P48380 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RFX3P48380 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.83■□□□□ 0.93
RFX3P48380 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.83■□□□□ 0.93
RFX3P48380 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.83■□□□□ 0.93
RFX3P48380 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFX3P48380 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
RFX3P48380 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RFX3P48380 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RFX3P48380 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.82■□□□□ 0.92
RFX3P48380 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.82■□□□□ 0.92
RFX3P48380 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
RFX3P48380 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
RFX3P48380 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.82■□□□□ 0.92
RFX3P48380 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.82■□□□□ 0.92
RFX3P48380 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RFX3P48380 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.82■□□□□ 0.92
RFX3P48380 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RFX3P48380 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX3P48380 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
RFX3P48380 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.81■□□□□ 0.92
RFX3P48380 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 AL356441.2-201ENST00000443009 864 ntBASIC20.81■□□□□ 0.92
RFX3P48380 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.81■□□□□ 0.92
RFX3P48380 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.81■□□□□ 0.92
RFX3P48380 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX3P48380 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX3P48380 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.8■□□□□ 0.92
RFX3P48380 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
RFX3P48380 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms