Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 MIR4449-201ENST00000578365 66 ntBASIC19.88■□□□□ 0.77
LIMS3P0CW19 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LIMS3P0CW19 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
LIMS3P0CW19 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMS3P0CW19 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMS3P0CW19 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMS3P0CW19 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMS3P0CW19 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMS3P0CW19 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMS3P0CW19 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMS3P0CW19 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMS3P0CW19 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMS3P0CW19 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LIMS3P0CW19 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMS3P0CW19 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
LIMS3P0CW19 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMS3P0CW19 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMS3P0CW19 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMS3P0CW19 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMS3P0CW19 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 RNF126P1-201ENST00000567452 1320 ntBASIC19.85■□□□□ 0.77
LIMS3P0CW19 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMS3P0CW19 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMS3P0CW19 FBXW4P1-201ENST00000426721 2239 ntBASIC19.85■□□□□ 0.77
LIMS3P0CW19 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LIMS3P0CW19 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.85■□□□□ 0.77
LIMS3P0CW19 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMS3P0CW19 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMS3P0CW19 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMS3P0CW19 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMS3P0CW19 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMS3P0CW19 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMS3P0CW19 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMS3P0CW19 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMS3P0CW19 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LIMS3P0CW19 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMS3P0CW19 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMS3P0CW19 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
LIMS3P0CW19 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.83■□□□□ 0.77
LIMS3P0CW19 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMS3P0CW19 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMS3P0CW19 AC087742.1-201ENST00000575880 1738 ntBASIC19.83■□□□□ 0.77
LIMS3P0CW19 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
LIMS3P0CW19 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.83■□□□□ 0.76
LIMS3P0CW19 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMS3P0CW19 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LIMS3P0CW19 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMS3P0CW19 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
LIMS3P0CW19 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMS3P0CW19 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMS3P0CW19 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
LIMS3P0CW19 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMS3P0CW19 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LIMS3P0CW19 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
LIMS3P0CW19 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMS3P0CW19 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMS3P0CW19 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMS3P0CW19 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMS3P0CW19 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LIMS3P0CW19 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMS3P0CW19 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMS3P0CW19 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMS3P0CW19 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMS3P0CW19 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMS3P0CW19 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMS3P0CW19 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMS3P0CW19 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIMS3P0CW19 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LIMS3P0CW19 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LIMS3P0CW19 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMS3P0CW19 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms