Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
CPSF4O95639 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4O95639 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CPSF4O95639 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF4O95639 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF4O95639 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4O95639 GUSBP5-202ENST00000510805 1989 ntBASIC21.19■□□□□ 0.98
CPSF4O95639 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4O95639 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.19■□□□□ 0.98
CPSF4O95639 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4O95639 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF4O95639 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF4O95639 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CPSF4O95639 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.18■□□□□ 0.98
CPSF4O95639 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF4O95639 SNX5-217ENST00000606557 1087 ntBASIC21.18■□□□□ 0.98
CPSF4O95639 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4O95639 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4O95639 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CPSF4O95639 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4O95639 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.18■□□□□ 0.98
CPSF4O95639 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF4O95639 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4O95639 AL353803.4-201ENST00000565882 1934 ntBASIC21.17■□□□□ 0.98
CPSF4O95639 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CPSF4O95639 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.17■□□□□ 0.98
CPSF4O95639 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.17■□□□□ 0.98
CPSF4O95639 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.17■□□□□ 0.98
CPSF4O95639 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CPSF4O95639 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.17■□□□□ 0.98
CPSF4O95639 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF4O95639 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF4O95639 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4O95639 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4O95639 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4O95639 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.16■□□□□ 0.98
CPSF4O95639 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4O95639 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.16■□□□□ 0.98
CPSF4O95639 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CPSF4O95639 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.16■□□□□ 0.98
CPSF4O95639 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.16■□□□□ 0.98
CPSF4O95639 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.16■□□□□ 0.98
CPSF4O95639 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.15■□□□□ 0.98
CPSF4O95639 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
CPSF4O95639 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.15■□□□□ 0.98
CPSF4O95639 AL031848.2-201ENST00000607670 837 ntBASIC21.15■□□□□ 0.98
CPSF4O95639 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
CPSF4O95639 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4O95639 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.15■□□□□ 0.98
CPSF4O95639 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CPSF4O95639 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
CPSF4O95639 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CPSF4O95639 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CPSF4O95639 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4O95639 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.14■□□□□ 0.97
CPSF4O95639 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.14■□□□□ 0.97
CPSF4O95639 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4O95639 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.14■□□□□ 0.97
CPSF4O95639 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.14■□□□□ 0.97
CPSF4O95639 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.14■□□□□ 0.97
CPSF4O95639 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CPSF4O95639 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4O95639 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4O95639 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4O95639 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CPSF4O95639 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4O95639 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CPSF4O95639 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CPSF4O95639 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.13■□□□□ 0.97
CPSF4O95639 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CPSF4O95639 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.13■□□□□ 0.97
CPSF4O95639 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CPSF4O95639 AC137630.3-201ENST00000607245 391 ntBASIC21.13■□□□□ 0.97
CPSF4O95639 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4O95639 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CPSF4O95639 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4O95639 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4O95639 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4O95639 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.12■□□□□ 0.97
CPSF4O95639 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4O95639 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.12■□□□□ 0.97
CPSF4O95639 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.11■□□□□ 0.97
CPSF4O95639 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CPSF4O95639 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.11■□□□□ 0.97
CPSF4O95639 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4O95639 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms