Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.29■□□□□ 0.526e-6■■□□□ 12.6
CDC40O60508 ORC4-211ENST00000490200 563 ntTSL 417.76■□□□□ 0.436e-6■■□□□ 12.6
CDC40O60508 ORC4-204ENST00000440042 552 ntTSL 317.47■□□□□ 0.396e-6■■□□□ 12.6
CDC40O60508 ARRB2-211ENST00000572497 432 ntTSL 417.39■□□□□ 0.376e-6■■□□□ 12.6
CDC40O60508 EPS8L2-202ENST00000524474 907 ntTSL 217.38■□□□□ 0.374e-11■■□□□ 12.6
CDC40O60508 TF-202ENST00000414694 546 ntTSL 417.23■□□□□ 0.354e-11■■□□□ 12.6
CDC40O60508 TF-203ENST00000460531 577 ntTSL 417.23■□□□□ 0.354e-11■■□□□ 12.6
CDC40O60508 EPS8L2-217ENST00000530452 704 ntTSL 317.15■□□□□ 0.344e-11■■□□□ 12.6
CDC40O60508 ARRB2-212ENST00000572782 523 ntTSL 317.06■□□□□ 0.326e-6■■□□□ 12.6
CDC40O60508 SLC35C2-207ENST00000480329 919 ntTSL 216.73■□□□□ 0.276e-6■■□□□ 12.6
CDC40O60508 AMPD2-222ENST00000531203 575 ntTSL 416.45■□□□□ 0.226e-6■■□□□ 12.6
CDC40O60508 ARRB2-205ENST00000570718 564 ntTSL 416.38■□□□□ 0.216e-6■■□□□ 12.6
CDC40O60508 ARRB2-209ENST00000571791 851 ntTSL 216.38■□□□□ 0.216e-6■■□□□ 12.6
CDC40O60508 ARRB2-217ENST00000575131 550 ntTSL 216.34■□□□□ 0.216e-6■■□□□ 12.6
CDC40O60508 TF-208ENST00000474287 645 ntTSL 216.27■□□□□ 0.24e-11■■□□□ 12.6
CDC40O60508 AMPD2-216ENST00000527846 585 ntTSL 416.05■□□□□ 0.166e-6■■□□□ 12.6
CDC40O60508 ORC4-206ENST00000461711 528 ntTSL 416.03■□□□□ 0.166e-6■■□□□ 12.6
CDC40O60508 AMPD2-212ENST00000486282 582 ntTSL 415.87■□□□□ 0.136e-6■■□□□ 12.6
CDC40O60508 ARRB2-219ENST00000576235 991 ntTSL 515.3■□□□□ 0.046e-6■■□□□ 12.6
CDC40O60508 EPS8L2-207ENST00000526651 572 ntTSL 414.9□□□□□ -0.024e-11■■□□□ 12.6
CDC40O60508 TF-206ENST00000466911 526 ntTSL 414.79□□□□□ -0.044e-11■■□□□ 12.6
CDC40O60508 AMPD2-217ENST00000528270 588 ntTSL 414.69□□□□□ -0.066e-6■■□□□ 12.6
CDC40O60508 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.45□□□□□ -0.16e-6■■□□□ 12.6
CDC40O60508 ARRB2-213ENST00000573886 665 ntTSL 213.89□□□□□ -0.196e-6■■□□□ 12.6
CDC40O60508 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.63□□□□□ -0.236e-6■■□□□ 12.6
CDC40O60508 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.61□□□□□ -0.236e-6■■□□□ 12.6
CDC40O60508 MZF1-AS1-203ENST00000600726 559 ntTSL 412.89□□□□□ -0.356e-6■■□□□ 12.6
CDC40O60508 RPS6KA2-211ENST00000510118 5992 ntTSL 2 BASIC12.51□□□□□ -0.416e-6■■□□□ 12.6
CDC40O60508 SLC35C2-212ENST00000493599 2510 ntTSL 212.49□□□□□ -0.416e-6■■□□□ 12.6
CDC40O60508 RPS6KA2-207ENST00000506565 587 ntTSL 412.07□□□□□ -0.486e-6■■□□□ 12.6
CDC40O60508 ARRB2-207ENST00000571206 1659 ntTSL 5 BASIC11.97□□□□□ -0.496e-6■■□□□ 12.6
CDC40O60508 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC11.57□□□□□ -0.566e-6■■□□□ 12.6
CDC40O60508 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC11.5□□□□□ -0.576e-6■■□□□ 12.6
CDC40O60508 AMPD2-203ENST00000358729 2838 ntTSL 2 BASIC11.3□□□□□ -0.66e-6■■□□□ 12.6
CDC40O60508 AMPD2-201ENST00000256578 3899 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.686e-6■■□□□ 12.6
CDC40O60508 ORC4-205ENST00000457954 647 ntTSL 410.67□□□□□ -0.76e-6■■□□□ 12.6
CDC40O60508 RPS6KA2-206ENST00000503859 4137 ntTSL 2 BASIC10.35□□□□□ -0.756e-6■■□□□ 12.6
CDC40O60508 MZF1-AS1-201ENST00000593642 565 ntTSL 39.87□□□□□ -0.836e-6■■□□□ 12.6
CDC40O60508 ARRB2-208ENST00000571428 864 ntTSL 39.85□□□□□ -0.836e-6■■□□□ 12.6
CDC40O60508 ORC4-212ENST00000495601 611 ntTSL 29.72□□□□□ -0.856e-6■■□□□ 12.6
CDC40O60508 AMPD2-204ENST00000369840 3130 ntAPPRIS ALT2 TSL 59.53□□□□□ -0.886e-6■■□□□ 12.6
CDC40O60508 TF-209ENST00000475382 586 ntTSL 48.36□□□□□ -1.074e-11■■□□□ 12.6
CDC40O60508 TNFRSF10D-201ENST00000312584 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.086e-6■■□□□ 12.6
CDC40O60508 TF-214ENST00000498622 719 ntTSL 27.63□□□□□ -1.194e-11■■□□□ 12.6
CDC40O60508 RPS6KA2-213ENST00000512860 552 ntTSL 47.5□□□□□ -1.216e-6■■□□□ 12.6
CDC40O60508 MBNL2-206ENST00000469707 2574 ntTSL 1 (best)7.23□□□□□ -1.256e-6■■□□□ 12.6
CDC40O60508 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.266e-6■■□□□ 12.6
CDC40O60508 VEGFA-214ENST00000493786 551 ntTSL 26.93□□□□□ -1.32e-31■■□□□ 12.6
CDC40O60508 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.57□□□□□ -1.364e-11■■□□□ 12.6
CDC40O60508 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.376e-6■■□□□ 12.6
CDC40O60508 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.36□□□□□ -1.396e-6■■□□□ 12.6
CDC40O60508 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.32□□□□□ -1.46e-6■■□□□ 12.6
CDC40O60508 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.56e-6■■□□□ 12.6
CDC40O60508 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.15□□□□□ -1.596e-6■■□□□ 12.6
CDC40O60508 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.11□□□□□ -1.596e-6■■□□□ 12.6
CDC40O60508 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.656e-6■■□□□ 12.6
CDC40O60508 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.57□□□□□ -1.686e-6■■□□□ 12.6
CDC40O60508 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.76e-6■■□□□ 12.6
CDC40O60508 MTCO1P12-201ENST00000414273 1543 ntBASIC3.39□□□□□ -1.876e-6■■□□□ 12.6
CDC40O60508 ORC4-203ENST00000416719 571 ntTSL 32.61□□□□□ -1.996e-6■■□□□ 12.6
CDC40O60508 ILF3-215ENST00000589485 620 ntTSL 219.11■□□□□ 0.656e-8■■□□□ 12.6
CDC40O60508 HP1BP3-210ENST00000438032 1159 ntTSL 519.01■□□□□ 0.636e-8■■□□□ 12.6
CDC40O60508 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.27■□□□□ 0.526e-8■■□□□ 12.6
CDC40O60508 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18■□□□□ 0.476e-8■■□□□ 12.6
CDC40O60508 HP1BP3-208ENST00000424732 970 ntTSL 316.8■□□□□ 0.286e-8■■□□□ 12.6
CDC40O60508 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.276e-8■■□□□ 12.6
CDC40O60508 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.226e-8■■□□□ 12.6
CDC40O60508 FLNA-215ENST00000474358 696 ntTSL 216.28■□□□□ 0.26e-8■■□□□ 12.6
CDC40O60508 MTG2-207ENST00000471352 785 ntTSL 514.92□□□□□ -0.026e-8■■□□□ 12.6
CDC40O60508 ILF3-207ENST00000587840 655 ntTSL 514.44□□□□□ -0.16e-8■■□□□ 12.6
CDC40O60508 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.126e-8■■□□□ 12.6
CDC40O60508 ILF3-214ENST00000589416 773 ntTSL 414.04□□□□□ -0.166e-8■■□□□ 12.6
CDC40O60508 ILF3-212ENST00000589173 570 ntTSL 513.12□□□□□ -0.316e-8■■□□□ 12.6
CDC40O60508 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.326e-8■■□□□ 12.6
CDC40O60508 MTG2-206ENST00000467101 2814 ntTSL 1 (best)12.85□□□□□ -0.356e-8■■□□□ 12.6
CDC40O60508 MTG2-202ENST00000448254 727 ntTSL 512.76□□□□□ -0.376e-8■■□□□ 12.6
CDC40O60508 ILF3-204ENST00000585835 849 ntTSL 312.74□□□□□ -0.376e-8■■□□□ 12.6
CDC40O60508 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC11.61□□□□□ -0.556e-8■■□□□ 12.6
CDC40O60508 MTG2-205ENST00000466933 667 ntTSL 311.58□□□□□ -0.566e-8■■□□□ 12.6
CDC40O60508 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.626e-8■■□□□ 12.6
CDC40O60508 ILF3-202ENST00000407004 3671 ntTSL 1 (best) BASIC10.64□□□□□ -0.716e-8■■□□□ 12.6
CDC40O60508 ILF3-222ENST00000592763 3866 ntTSL 5 BASIC10.09□□□□□ -0.796e-8■■□□□ 12.6
CDC40O60508 ILF3-208ENST00000587928 4230 ntTSL 29.84□□□□□ -0.836e-8■■□□□ 12.6
CDC40O60508 RPL32-203ENST00000396957 1749 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.846e-8■■□□□ 12.6
CDC40O60508 RPL32-204ENST00000429711 2117 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.946e-8■■□□□ 12.6
CDC40O60508 HP1BP3-205ENST00000417710 572 ntTSL 58.71□□□□□ -1.026e-8■■□□□ 12.6
CDC40O60508 RPL32-201ENST00000273223 567 ntTSL 3 BASIC8.57□□□□□ -1.046e-8■■□□□ 12.6
CDC40O60508 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.296e-8■■□□□ 12.6
CDC40O60508 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.436e-8■■□□□ 12.6
CDC40O60508 RPL32-207ENST00000452606 631 ntTSL 25.93□□□□□ -1.466e-8■■□□□ 12.6
CDC40O60508 RPL32-208ENST00000457131 555 ntTSL 25.25□□□□□ -1.576e-8■■□□□ 12.6
CDC40O60508 HP1BP3-212ENST00000487117 1598 ntTSL 25.1□□□□□ -1.596e-8■■□□□ 12.6
CDC40O60508 HP1BP3-207ENST00000419948 759 ntTSL 54.14□□□□□ -1.756e-8■■□□□ 12.6
CDC40O60508 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.34e-6■■□□□ 12.5
CDC40O60508 RNASET2-209ENST00000499370 2164 ntTSL 29.91□□□□□ -0.827e-7■■□□□ 12.5
CDC40O60508 RNASET2-208ENST00000496851 881 ntTSL 59.15□□□□□ -0.947e-7■■□□□ 12.5
CDC40O60508 PRPF8-216ENST00000577001 3274 ntTSL 513.58□□□□□ -0.249e-6■■□□□ 12.5
CDC40O60508 SLC26A6-220ENST00000489483 5682 ntTSL 214.3□□□□□ -0.122e-22■■□□□ 12.5
CDC40O60508 SLC26A6-211ENST00000431739 588 ntTSL 313.74□□□□□ -0.212e-22■■□□□ 12.5
CDC40O60508 SLC26A6-209ENST00000426599 555 ntTSL 413.18□□□□□ -0.32e-22■■□□□ 12.5
Retrieved 100 of 5,364 protein–RNA pairs in 34 ms