Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL6A5A8TX70 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A5A8TX70 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL6A5A8TX70 AC211429.1-201ENST00000415277 523 ntBASIC17.67■□□□□ 0.42
COL6A5A8TX70 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A5A8TX70 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
COL6A5A8TX70 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A5A8TX70 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A5A8TX70 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 SLC7A5P1-201ENST00000568957 537 ntBASIC17.66■□□□□ 0.42
COL6A5A8TX70 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A5A8TX70 RNA5SP413-201ENST00000516373 109 ntBASIC17.66■□□□□ 0.42
COL6A5A8TX70 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.66■□□□□ 0.42
COL6A5A8TX70 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A5A8TX70 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A5A8TX70 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A5A8TX70 DUX4L16-201ENST00000555130 1264 ntBASIC17.65■□□□□ 0.42
COL6A5A8TX70 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL6A5A8TX70 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A5A8TX70 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A5A8TX70 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A5A8TX70 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A5A8TX70 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A5A8TX70 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A5A8TX70 AC008550.1-201ENST00000511500 884 ntBASIC17.64■□□□□ 0.41
COL6A5A8TX70 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A5A8TX70 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A5A8TX70 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A5A8TX70 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A5A8TX70 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A5A8TX70 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A5A8TX70 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A5A8TX70 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A5A8TX70 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A5A8TX70 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A5A8TX70 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
COL6A5A8TX70 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A5A8TX70 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A5A8TX70 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A5A8TX70 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A5A8TX70 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A5A8TX70 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.63■□□□□ 0.41
COL6A5A8TX70 AC133041.1-202ENST00000642053 222 ntBASIC17.63■□□□□ 0.41
COL6A5A8TX70 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL6A5A8TX70 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
COL6A5A8TX70 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A5A8TX70 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A5A8TX70 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A5A8TX70 AC010331.1-201ENST00000611423 582 ntBASIC17.62■□□□□ 0.41
COL6A5A8TX70 AC105233.4-201ENST00000642045 216 ntBASIC17.62■□□□□ 0.41
COL6A5A8TX70 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A5A8TX70 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A5A8TX70 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A5A8TX70 AC133637.1-201ENST00000624115 1537 ntBASIC17.61■□□□□ 0.41
COL6A5A8TX70 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A5A8TX70 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 AC097639.1-201ENST00000565519 1891 ntBASIC17.61■□□□□ 0.41
COL6A5A8TX70 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A5A8TX70 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A5A8TX70 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A5A8TX70 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A5A8TX70 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A5A8TX70 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A5A8TX70 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A5A8TX70 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A5A8TX70 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A5A8TX70 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A5A8TX70 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A5A8TX70 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.59■□□□□ 0.41
COL6A5A8TX70 AC010525.1-201ENST00000585559 441 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms